Protein Info for ABI39_RS14430 in Phocaeicola dorei CL03T12C01

Annotation: lactate utilization protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 PF02589: LUD_dom" amino acids 67 to 283 (217 residues), 144.2 bits, see alignment E=1.7e-45 PF13183: Fer4_8" amino acids 301 to 366 (66 residues), 46.4 bits, see alignment E=1.9e-15 PF13534: Fer4_17" amino acids 302 to 367 (66 residues), 33.2 bits, see alignment E=2.5e-11

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_2877)

Predicted SEED Role

"Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF" in subsystem L-rhamnose utilization or Lactate utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (455 amino acids)

>ABI39_RS14430 lactate utilization protein (Phocaeicola dorei CL03T12C01)
MSTKHSKAAAEFLKNKKQAAWHDETLWLVRAKRDRLSKEVPEWEELRNMACATKLYSNSH
LDELLVEFENNARANGAHVYWAKDADEYCNIVYNILNQHGVKHFIKSKSMLAEECELNPF
LENKGIEVVESDLGERILQLMHLKPSHIVLPAIHIKREQVGELFEREMGTEKGNFDPTYL
THAARKNLRQKFIHAEAAMTGANFAVASTGEIVVCTNEGNADMGTSQPKLQIAAFGMEKI
VPDRESLGVFTRLLARSATGQPITTYTSHYRKPREGGELHIIIVDNGRSKILADQKHIKT
LNCIRCGACMNTCPVYRRSGGYSYTYFIPGPIGINLGMLKAPLHYYDNVSACSLCYSCSF
VCPAKVDLAEQIYLWRQDLDKLGKADRMKRVMSGGMEFMMNRPLIFNMALKWAPLVNGMP
RFLIYNGLNDWGKGREMPKFAKESFNEMWKKGKVK