Protein Info for ABI39_RS14190 in Phocaeicola dorei CL03T12C01

Annotation: cytochrome c biogenesis protein CcsA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 194 to 216 (23 residues), see Phobius details amino acids 228 to 248 (21 residues), see Phobius details amino acids 485 to 503 (19 residues), see Phobius details amino acids 515 to 540 (26 residues), see Phobius details amino acids 546 to 567 (22 residues), see Phobius details amino acids 574 to 592 (19 residues), see Phobius details amino acids 612 to 637 (26 residues), see Phobius details amino acids 657 to 679 (23 residues), see Phobius details amino acids 692 to 709 (18 residues), see Phobius details amino acids 718 to 741 (24 residues), see Phobius details PF05140: ResB" amino acids 71 to 180 (110 residues), 65.6 bits, see alignment E=4.1e-22 PF01578: Cytochrom_C_asm" amino acids 547 to 745 (199 residues), 124.5 bits, see alignment E=5e-40

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_2769)

Predicted SEED Role

"Putative cytochrome C-type biogenesis protein" in subsystem Biogenesis of c-type cytochromes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (750 amino acids)

>ABI39_RS14190 cytochrome c biogenesis protein CcsA (Phocaeicola dorei CL03T12C01)
MKLLKRTAFSLLGILLLILTIATILEKIYGTDFVNEYIYSSVPFVILWGVTAITSLLYII
KSKLHRQPVIFLLHLSLLFILAGAFTTWIYGEQGTMRVRQGEQQTSFTDSKGISHQLPFS
ITLNQFEIIYYKGTLAPMDFISHISVADKDCHRQIQGKVSMNHIFSYQHYRFYQSGYSED
NEGSVFSVSHDPYGIGITYAGYTLLLLSTVFFFFSPQSRFRQLLKSPLLHRSLTVILLLF
AFSLNSNFLKANSPSPKVLPREVAEHFGDLYILYNNRICPLQTFARDFTVKLYGSSSYKG
LTPEEVLTGWLFYYDSWKNEPIIRIKSNEARKLLEIEGNYARLKDYISTINEYKLEKMMN
HIRSGEQVTDKRGIEEADEKFNIINLVCTGAMMKIFPCRNIAGKTLEWYSQSDQLPQDMD
NDKWVFIRKSMSYVNEMIVMKKYNDACLLLEKIKKYQQKECDGLLPADNKFKAEKIYNQF
DYSKSVAMACICIGLICFIYYCHCMASQKRTSRKAIIILNILLWIVFTYLSAAICLRGYV
SNHLPLSNGFETMQFMAWCTLLLTFLLQRKFAMLLPFGFLLCGLTLMVSMLGESNPQITQ
LMPVLQSPLLSIHVVVIMIAYSLLAFIMLNGVTAVILHQSQKECKEQIERLQIISQIILY
PAIFLLAIGIFIGAVWANVSWGRYWGWDPKEVWALITMLVYALALHPRSLPWFHRTMFFH
VFCITAFITVLITYFGVNFLLGGMHSYANG