Protein Info for ABI39_RS12840 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1053 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13620: CarboxypepD_reg" amino acids 24 to 85 (62 residues), 45.1 bits, see alignment 1.7e-15 TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 24 to 1053 (1030 residues), 788.8 bits, see alignment E=1e-240 PF13715: CarbopepD_reg_2" amino acids 25 to 106 (82 residues), 71.4 bits, see alignment 8e-24 PF07715: Plug" amino acids 115 to 221 (107 residues), 74.5 bits, see alignment E=1.4e-24 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 197 to 227 (31 residues), 64 bits, see alignment (E = 8.5e-22)

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_2578)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1053 amino acids)

>ABI39_RS12840 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MKKTLLLLFVCLFVGISHAQAQVTVKGTVISSENNEPVIGASVLVKGTTNGTITDINGQF
TLTNISPTNKTIIVSFIGMETQEVTIKPEMKIVMTSTTEVMEEVLVVAYGTAKKSAFTGS
AKMIHTEQITKRPVTNVIESLSGQVAGLQMTMTNGQPGETPSILIRGISSMSAKTDPLIV
LDGMPYEGGWNNINPADVESISVLKDAASTALYGARGANGVIIITTKSAKAGDAKITVDA
KWSANTRGEIEYDYIKDPGEYYQAHYKALYNYYLNAQGQTPDQAYVSANTNMIGTNSQTG
GLSYNVYSYPEGEYLIGKNGLLNPNAKLGRIVNGYYLTPDNWVDATYHTALRQEYNVNIS
GGSDKAQIYASFGYLDEDGIAQGSDYNRITGRLKTTYQAKPWMRFGANISYTHSIQNAAA
GGFAQAFNTAPIYPLYLRDTNGKIMQDKNGDMYDFGVSNQGPLNRPINPNSNGIKLSQLD
TYNTSANTLNGDAFIDINFLKDFKFTFNAGTSIRDSRYKNALNPFYGTANSLNGSINVQH
WRRTTLNLQQILNYNHSFGLHNVSLMAGHESFNNVYEELYAAKNSMFSFFQNQELNGAIS
GTNDESSYKSKYNTEGYLFRGMYDYDGKYFFQLSYRRDASSRFHPDNRWGNFYSVGTAWI
LTKEKWLDDIKWLDLLKLKFSVGQQGNDRIDDFLYVDTYNINNSNNELSLGFSRKGNKNI
TWETNTNINLGIEFELLKGRLSGSIEYFNRRTTDMLNRFSVPLSLGYSGYYDNIGDMNNK
GVEIDLKYIPVKTRNVTWNIGFNATHYRNKISRLAESKKTDIIDGHAGYVNGLYYYGEGL
PMYTNYVQKYAGVSEEGKPQWYYTDKQTGEMKTTTTYSQADLYLCGDAVPDLYGGINTSL
SFYGFDFSAQINYSIGGQAYDYGYQALMSPPTSTHLGYNVHKDIYKAWSPENTQSDIPQW
QFNDLYSVKTSDRFLTNASSISIQNIQLGYTFSKKTLRSLYLTNLRIYVACDNVYYWSKR
KGFDSRVTWNGNKDSSGEYSAVRAFSAGLSLQF