Protein Info for ABI39_RS11760 in Phocaeicola dorei CL03T12C01

Annotation: FtsX-like permease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 16 to 34 (19 residues), see Phobius details amino acids 290 to 312 (23 residues), see Phobius details amino acids 333 to 357 (25 residues), see Phobius details amino acids 377 to 399 (23 residues), see Phobius details PF02687: FtsX" amino acids 293 to 409 (117 residues), 45 bits, see alignment E=4.9e-16

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 84% identity to bvu:BVU_2348)

Predicted SEED Role

"ABC transporter permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (416 amino acids)

>ABI39_RS11760 FtsX-like permease family protein (Phocaeicola dorei CL03T12C01)
MNKKLLTQIKNEWRSNLWLVTELLLVSVVMWYIVDYMYVKAAVYYEPRGFDISHCYLIQM
GRLTDKSPDFIPNQTKEQQREDVKGLAERLKYRPDIEAVGFGQNSYPYNGSNSGTEVRYD
TLQSPGWTIRRLVSPDFVRVFQYHGTRGETPEQLAELLSHPKNFLASDNLYKKRYGRDLT
PLVGKQFYLFGDTTETYTLGASLEVVRYSDYEQAWNSYSMVKLLPENWYDVGLELCVRVK
EDQDKDFITRLKADSEKLYRVGNVFIAEVRSFDDIRRNYQQSQTNSMRSYILGMVFLLLN
IFLGLLGTFWFRTQQRRGEIALMKSLGGTDHSVFVRQLVEGLLLLVIATIPAVFINWNLA
NSELNAWMNGTTIEGGRFIITVLISFILIALMIVVGIWIPARKAMKVQPAEALHNE