Protein Info for ABI39_RS11600 in Phocaeicola dorei CL03T12C01

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 98 PF14559: TPR_19" amino acids 17 to 79 (63 residues), 28.8 bits, see alignment E=6.2e-10 PF07719: TPR_2" amino acids 44 to 74 (31 residues), 33.4 bits, see alignment E=1.4e-11 PF13181: TPR_8" amino acids 44 to 74 (31 residues), 24.1 bits, see alignment E=1.4e-08 PF13174: TPR_6" amino acids 45 to 75 (31 residues), 23.1 bits, see alignment E=4.2e-08 PF00515: TPR_1" amino acids 45 to 74 (30 residues), 37.2 bits, see alignment E=8.5e-13 PF13432: TPR_16" amino acids 46 to 80 (35 residues), 26.2 bits, see alignment E=4.8e-09 PF13176: TPR_7" amino acids 46 to 76 (31 residues), 25.9 bits, see alignment E=3.4e-09 PF13414: TPR_11" amino acids 49 to 77 (29 residues), 29.6 bits, see alignment E=2.3e-10

Best Hits

KEGG orthology group: None (inferred from 97% identity to bvu:BVU_2315)

Predicted SEED Role

"FIG00403100: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (98 amino acids)

>ABI39_RS11600 tetratricopeptide repeat protein (Phocaeicola dorei CL03T12C01)
MRQSCLMTEELQDIKTLIEQGDTERAIHALTNFIRNDAHVNDEPYYLLGNAYRKMGNWQQ
ALNNYLEAIERNPESPAVSARDMIMNILNFYNKDMYNQ