Protein Info for ABI39_RS10925 in Phocaeicola dorei CL03T12C01

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1316 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 772 to 793 (22 residues), see Phobius details PF07494: Reg_prop" amino acids 35 to 57 (23 residues), 23.4 bits, see alignment (E = 1.7e-08) amino acids 78 to 99 (22 residues), 23.9 bits, see alignment (E = 1.1e-08) amino acids 301 to 322 (22 residues), 21.8 bits, see alignment (E = 5.5e-08) amino acids 434 to 456 (23 residues), 17.7 bits, see alignment (E = 1.2e-06) amino acids 475 to 496 (22 residues), 16.6 bits, see alignment (E = 2.7e-06) amino acids 566 to 589 (24 residues), 19.7 bits, see alignment (E = 2.7e-07) PF07495: Y_Y_Y" amino acids 702 to 765 (64 residues), 63.2 bits, see alignment 7e-21 PF00512: HisKA" amino acids 820 to 883 (64 residues), 43 bits, see alignment 1.5e-14 PF02518: HATPase_c" amino acids 931 to 1038 (108 residues), 65.5 bits, see alignment E=2.3e-21 PF00072: Response_reg" amino acids 1072 to 1180 (109 residues), 82.5 bits, see alignment E=1e-26 PF12833: HTH_18" amino acids 1238 to 1315 (78 residues), 70.1 bits, see alignment 6.5e-23 PF00165: HTH_AraC" amino acids 1280 to 1314 (35 residues), 27.7 bits, see alignment (E = 8.9e-10)

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_2226)

Predicted SEED Role

"DNA-binding response regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1316 amino acids)

>ABI39_RS10925 response regulator (Phocaeicola dorei CL03T12C01)
MKRIFIIGLLFLYAFTLYSQSNIRYYFKTLDIQDGLSQNTVNAILQDKQGFMWFGTKDGL
NRFDGLSFRIFKKENSALGNNFITALHEDKEGNIWVGTDAGVYVYNPLLEDFTVFDRVSD
TGDMISRAVTRIESDEDSDIWISVDYQGLFHFDRVQDRLINCLHRDKRKNQLANVTRFWF
EEKLCWVSLYDDNLYYTKDNFKTLFPFQDSEGKEPFKDDIINTWIMGPHNCWYIGSSNGL
TEINLTTGRVRRLLNYYVRDLGFKSDKELWVGTESGLYIYDLEKGEIAHLTVSNGNDSYA
LADNAIYSICRDNEGGMWIGSYFGGVNYYPRQWTYFEKFYPRDDIKNFGRRVREFCESND
GTVWIGTEDKGLFHFYPESGKIEKFSHPSIYQNVHGLCLDGDDLWVGTFSGGLSRIDLLT
KQVRHYQKGISPNSLDANNVFSICKTTSGDLWIGTTSGLLRYNRDTDDFTRMPELANMFV
YKILEDFNGNLWLATYSNGVFRYDVNKKEWKNFIFHKNDSTSLPYDKVISICEDSRKRLW
FMTQGAGFCCFNPENESFTRFDMSKGFPSNIIYRMVEDNRGNLWLTTNNGLVCFNPETDD
KRVYTTANGLLSNQFNYQSGYKDKMGRIYLGSINGFITFDPSTFVENTFVPPVVITDFFL
FNKRMQIGSKDSPLKESIVFSDEVELESDQNSFSLHAAALGYQAPEMNQLVYKMEGFDKE
WYNVGRNSVINYSNLPYGTYIFHLRGSNSDGKWNEKERILKIHILPPFYLSGWAYFIYLL
LGILSVVGIIYYFRKRNEQKHQQAMEKFEREKERELYTAKIDFFTNVAHEIRTPLTLIKS
PLENVLVSPNVSADIRDDLEIMNLNTTRLLDLVNQLLDFRKTETRGFQLNFVECNISDIL
QQVYMRFTPLARQKKLEFVIECSESIYASIDREALTKIISNLFTNAIKYSETYIHVRLWM
EDTCWFLSVCNDGNVIPMEMREEIFKPFIQYKDGFSRKVSGTGIGLALARSLAELHEGNL
IMDDSQKQNCFILSLPVKHEHTIAISKSEIKLKEDPKEEDPGELQQKPRYTVLIVEDNVE
MLAFVVRQLSPVYQILTATNGVEALKVLEGHTVNLIVSDIMMPEMDGLELCDRIKSDLDY
SHIPIVLLTAKTTLQSKIDGLKSGADAYIEKPFSVEYLKVSVANLLSNHEKLHAAFAHSP
FIQTNSMAMTKADETFLKTLNEVIVANMQNPDFCLDDMASLLNMSRSSLNRKIKGVLDMT
PNDYIRLERLKKAAQLLREGECKVNEVCYMVGFNTPSYFTKCFQKQFGILPKDFVK