Protein Info for ABI39_RS10705 in Phocaeicola dorei CL03T12C01

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1424 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details transmembrane" amino acids 872 to 892 (21 residues), see Phobius details PF07494: Reg_prop" amino acids 46 to 69 (24 residues), 21.7 bits, see alignment (E = 6.3e-08) amino acids 182 to 203 (22 residues), 20.9 bits, see alignment (E = 1.1e-07) amino acids 482 to 503 (22 residues), 15.5 bits, see alignment (E = 6.6e-06) amino acids 523 to 546 (24 residues), 19.2 bits, see alignment (E = 4.1e-07) amino acids 618 to 638 (21 residues), 16.7 bits, see alignment (E = 2.5e-06) amino acids 665 to 687 (23 residues), 16 bits, see alignment (E = 4.5e-06) PF07495: Y_Y_Y" amino acids 808 to 863 (56 residues), 54.8 bits, see alignment (E = 2.8e-18) PF00512: HisKA" amino acids 913 to 976 (64 residues), 47.7 bits, see alignment (E = 5.3e-16) PF02518: HATPase_c" amino acids 1024 to 1132 (109 residues), 79.6 bits, see alignment 9.6e-26 PF00072: Response_reg" amino acids 1178 to 1288 (111 residues), 76.6 bits, see alignment 6.8e-25 PF12833: HTH_18" amino acids 1345 to 1421 (77 residues), 66 bits, see alignment 1.3e-21

Best Hits

Predicted SEED Role

"DNA-binding response regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1424 amino acids)

>ABI39_RS10705 response regulator (Phocaeicola dorei CL03T12C01)
MRYYSDVKPNDMKNRIFFLLLFFVCLEWNAYAVIDIQSIHITSSDGLANNTIRDIFQDKK
GFIWISTTNGLSRYDGHSFITLLPEKDSPISLADYHVKKIDEDKNGFLWVLSTSNVFSCY
DLRHNCFVDFTGCGEHDQAYAYRVETANGDNWLWDGQKGCRKISFENEHFSSVTFQCENG
KLPSNKVNSLIEDSRGNVWICTQEGLVKVTRNKIEVISDMHNFRAAFSYENACFFLADNG
DIYVYDEDEKLHFVQRIGKDDVDFHFTTHFGTKDDWWLFTTKGSYRFHLSTRQVRLDNPI
NIPNARFVRDNQGDFYVFNQTGVLHYFQKETGICKILSLIDAAQMMPAAEERYEVIQDNR
GLIWISTFGYGLFVYNPQEDIISHYTYQETGKNLVHSNFLHSLLLDHSGNVWVGSEFAGV
TLLSVLSEGSYRIYPEHESINDYVNAIRTVVKMPDGGFWFGTRQGNVYAYDKNLEAASCY
KMPYNYIYAASCDGDGKLWLGTRTMGLCIDGRWYHKMAGDTLSLAHENIFDIYRDDKNRM
WIGTFGGGLNLAVSRKDRYVFRKFLTGSGRLQEVRMITQDNKKRLWVGTNKGLCVFYGDS
IIADAHNYKLYNYENGDLPGYEIKCIFRDSQNRMWIGMLGGGFSVCNPSEDYRNLKFVHY
STTDGLVNNMVESIIEDKTGKIWIATQYGLSRFSPDTETFENFFFSASMQGNVYNEHGAA
ITEDGLLLFGTNHGVIVIDPLKVTSSPMTRNVILTNLKVNGITVQVGEKDSPLTQALSYT
QNIKLDYDQNSFIIEFSTLDYSLAFPSRFIYKLSHFDNEWSTPSSLNFASYKNLSPGTYH
LHVKACNSAGIWSDEETVLNIVITPPFWETTWAYLFYFLVVVIVLYVAFCLIRNFNNLRN
RIQVETQLTEYKLMFFTNISHEFRTPLTMIQGALEKIESLNKIPKEMVYPIQLMNKSTNR
MLRLINQLLEFRKMQNNKLSLMLEETDVMVFFYDIYRSFKETADDKQIDFHFAPSTSSYK
MFVDQSKLDKIVYNLLSNALKYTPKGGKVVFAIIVNEEVGKLFISVSDNGVGIPKEKQGE
LFSRFMQSGFSHNSVGIGLHLTYELVNVHKGSISFDENEGGGSVFTVILPLDSSVYGKND
FLVSSILQEESFVHEQCDTYLTVNHDSVTPDPLNKKRILIIEDDGDVRKFLETELGIYFE
IISEPDGLSGLQKAQSFEVDLIICDVLMPGMNGFDVTRKLKRDFETSHIPIILLTAMSTS
ENKLEGVESGADAYITKPFSSRLLLARIFQLIEQREKLKRKFSNDPAMTSQALCSTELDR
KFGEKLQTILEKQLDNPEFTIEDFASAVGVSRAAFFRKVKGVTGYTPNEYMRILRMKRAM
ELLQEGIYNVSEIAYKVGMNDPLYFSKCFKSHFGAPPSAYLHKK