Protein Info for ABI39_RS10650 in Phocaeicola dorei CL03T12C01

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 583 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 395 to 412 (18 residues), see Phobius details PF13424: TPR_12" amino acids 205 to 268 (64 residues), 30.2 bits, see alignment E=1e-10 PF13374: TPR_10" amino acids 240 to 269 (30 residues), 22.5 bits, see alignment (E = 2.2e-08) PF12833: HTH_18" amino acids 495 to 574 (80 residues), 68.9 bits, see alignment E=9.5e-23 PF00165: HTH_AraC" amino acids 534 to 574 (41 residues), 36.4 bits, see alignment 1.1e-12

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_2093)

Predicted SEED Role

"FIG00413619: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (583 amino acids)

>ABI39_RS10650 AraC family transcriptional regulator (Phocaeicola dorei CL03T12C01)
MKLKCLFLLLLLGISFCVHAQKRPVILEKQLEIIRKEPDNGDALKFLCQYYLNKGDYSKT
ITYAEIMKNVADKTKNPLLQLYSYIYQAQAQMMSGREKIAKKNLNLSLELATKLNNDSTL
CSVYGSLGLYSANIETDYYRAIRWLYKGIQLAQQNNFQQQYALLLGNLANIYYLKKDTAG
IKYALECYELGHSMRNPYIIYSGAVNSAYMYFLMKQNEEAMKYIHEAETLMLENDFYDQA
HTYNLFGNILYDMGEYAQALEYYKKAMKDKQAAQTSSIVYAHLGYARILMQQNKQPEAIL
LLKQGIAISYARVNAIHRNELYENLSTCYEQLHQYHDALKYYKIFRLENDSLFNKDKERD
LSEMRFKYDSERQENLIKQSKLDVMQKEQRIQQQTFILIITVIVLGLLYYLYRRKNKLYL
SIVKQNQEAIKRETELNRRIKELETNAPSMVSTSEKYASSSLTDEKSLELFRTLERIMRE
EKIYKDNFITKDKVAEILGTNRTYLSRIINEQSKLSFTHYVNRFRIEEAIRLLSDPNNET
PMKAISAELGFNSISTFYNLFQSSVGMTPSQYRNKVMELQKEQ