Protein Info for ABI39_RS10455 in Phocaeicola dorei CL03T12C01

Annotation: iron ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 59 to 79 (21 residues), see Phobius details amino acids 91 to 116 (26 residues), see Phobius details amino acids 123 to 146 (24 residues), see Phobius details amino acids 153 to 176 (24 residues), see Phobius details amino acids 201 to 224 (24 residues), see Phobius details amino acids 245 to 271 (27 residues), see Phobius details amino acids 287 to 308 (22 residues), see Phobius details amino acids 315 to 334 (20 residues), see Phobius details PF01032: FecCD" amino acids 16 to 334 (319 residues), 246.2 bits, see alignment E=2.1e-77

Best Hits

KEGG orthology group: K02015, iron complex transport system permease protein (inferred from 96% identity to bvu:BVU_2054)

Predicted SEED Role

"Vitamin B12 ABC transporter, permease component BtuC" in subsystem Coenzyme B12 biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (343 amino acids)

>ABI39_RS10455 iron ABC transporter permease (Phocaeicola dorei CL03T12C01)
MKNKGTKYGIILLLLILALTGANLLFGSVNIPAEAVWHILTGNEVEKASWSFIVWESRLP
QAVTALLCGMALASSGLMLQTTFNNPLADSSILGISSGASLGVALVMLAGAGTITAGVFT
LSGFISVIIGAFIGSMLVMGIILFFSTLIKNSIMLLIIGIMIGYITSSAISLLNFFSTAE
GVHSYMIWGMGNFGGVSLQQLPFFSLVTATGLLITILLIKPLNALLLGTRYAENLGINIR
RTRNLLLIATGILTAITTAFCGPISFIGLAVPHIARLMLGTSNHNSLLPVTMLTGGVIAL
VCNFICILPGEAGIIPLNAVTPVIGAPIIIYVIVNQRKIQYFN