Protein Info for ABI39_RS10115 in Phocaeicola dorei CL03T12C01

Annotation: TIGR01212 family radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 308 TIGR01212: radical SAM protein, TIGR01212 family" amino acids 6 to 307 (302 residues), 307.6 bits, see alignment E=4.1e-96 PF04055: Radical_SAM" amino acids 44 to 199 (156 residues), 58.9 bits, see alignment E=7.3e-20 PF16199: Radical_SAM_C" amino acids 213 to 297 (85 residues), 93.7 bits, see alignment E=6e-31

Best Hits

KEGG orthology group: K07139, (no description) (inferred from 97% identity to bvu:BVU_1992)

Predicted SEED Role

"COG1242: Predicted Fe-S oxidoreductase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (308 amino acids)

>ABI39_RS10115 TIGR01212 family radical SAM protein (Phocaeicola dorei CL03T12C01)
MNREMLYNDLSGFLAMHFPCKVQKISINAGFTCPNRDGSVGYGGCTYCNNQTFNPAYCHT
GKSVTQQLEEGKRFFVRKYPEMKYLAYFQAYTNTYGELEELKRKYEEALMVEDVVGLVIG
TRPDCMPISLLDYLEELGKHIFVLVEYGIESTDDETLRRINRGHTFAVSAEAVRKTAERG
ILVGGHIILGLPGEKREMLIGQAGVLSQLPLTTLKLHQLQLIKGTRMASEYVKDPEAFHL
YTADEYVDLVIDYIEHLRPDIVLERFVSQSPKELLIAPDWGLKNYEFTNKVKKRMREKDA
WQGKYYKY