Protein Info for ABI39_RS09080 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1136 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 59 to 1136 (1078 residues), 878.5 bits, see alignment E=8.2e-268 PF13620: CarboxypepD_reg" amino acids 60 to 124 (65 residues), 48.3 bits, see alignment 1.7e-16 PF13715: CarbopepD_reg_2" amino acids 61 to 141 (81 residues), 73.8 bits, see alignment 1.4e-24 PF07715: Plug" amino acids 149 to 255 (107 residues), 67.2 bits, see alignment E=2.7e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 232 to 261 (30 residues), 63.9 bits, see alignment (E = 8.6e-22)

Best Hits

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1136 amino acids)

>ABI39_RS09080 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MENVQKTRRLFASAYGCKASRSFLIWGLSAAMSISVIPVMAEISVGEKNYDTQIVSQTKT
ITGTIIDETGEPMIGVSVLVQGTTTGAVTDLDGKFTLEVPANATLVVSYIGYKTQNVKVG
SQNTFAIKMESDNEVLDEVVVIGYQTIKRKDLTGSVASVSGKTVSVMPVSNVAQAMQGKL
PGVNITSQDGRPDAAISIRVRGGGSISQSNEPLILVDGVTVNSLNDIPSDQVESIDVLKD
ASSTAIYGARGANGVILVTTKGAKEGKVSVSYNGYVKFNTPTKYLETLDPYDYLSFVWGN
AAASGDAYRLPFEKLYGIGDYLGSNTEGIESYRNTKNYNIQKDVYNSSVSHNHDLSVSGG
TEKTKVLFAMNYMDEQGMKLNSYAKRGGVSLKINQKLRDNLDINLDTRYSDMRTMGDEGT
TNGSGSLLSSSYRFRPIATRDILGDLNALREGNMEMYGRQSTWDTYSPVARIGDYDPLYI
KQRLRGTLSLNWRLFDGFAYHTDFTLNQSWEQDKIWGGAIYNNYLDDETGAKLYAGNVEY
TKRDSWGLRWTNTISYDFNFLPKQHRLNILLGHEVTDSGGSKMSISASHFPSNFTKDNAF
AMINQYDADHGTSKFSSGVDIPGRILSFFGRANYTLMDRYLFTVTFRADGSSKFSPEHRW
GYFPAAAFGWRLSEETFMEGTKDWLDNLKVRLSYGTVGNDGISSDLWSQTWTSETDLRYQ
YILNNQYSSSYDLSTEQMANKNLKWETTITRNFGFDFGFLKNRLWGSLDLYWNTTKDLLM
LTSLPGITGFTSTYDNIGQTSNKGIEFSLSGVIFENKDWNITAGMNINFNKGKVDKLAEN
VTGLYGSSWCGSSSFPGEDYILQEGKPVGMVRGFIYDGFYTTDDFNYVNGQYILKEGVAD
LGSFINPVHGVDRPSGQNAYPGLPKFRDMDNSGSIDEKDVTIIGDMNPVHTGGFNINTTY
KNFDLGLYFNWSYGNDVYNVNKIASLYGAKEKGVYENKLGFMKDSYKIYDVVDGKLVRLT
TPEQLNAANVNANLPLPYSENGVTSSIAIEDGSYLRLNTLTLGYSLPDKVLHKAGLSKLR
IYGTIYNLFTLTGYSGLDPEVSANTSQNKAKYPTVGLDWGTYPRARSFVVGLNLAF