Protein Info for ABI39_RS09010 in Phocaeicola dorei CL03T12C01

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1417 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 861 to 882 (22 residues), see Phobius details PF07494: Reg_prop" amino acids 35 to 57 (23 residues), 19.3 bits, see alignment (E = 3.2e-07) amino acids 171 to 191 (21 residues), 17.7 bits, see alignment (E = 1e-06) amino acids 513 to 536 (24 residues), 20.1 bits, see alignment (E = 1.7e-07) amino acids 609 to 630 (22 residues), 20.7 bits, see alignment (E = 1.1e-07) amino acids 655 to 677 (23 residues), 23.7 bits, see alignment (E = 1.2e-08) PF07495: Y_Y_Y" amino acids 790 to 853 (64 residues), 54.7 bits, see alignment 2.7e-18 PF00512: HisKA" amino acids 904 to 966 (63 residues), 50.9 bits, see alignment (E = 4.8e-17) PF02518: HATPase_c" amino acids 1014 to 1122 (109 residues), 84.9 bits, see alignment 1.8e-27 PF00072: Response_reg" amino acids 1167 to 1276 (110 residues), 78.9 bits, see alignment 1.2e-25 PF12833: HTH_18" amino acids 1334 to 1411 (78 residues), 60.7 bits, see alignment 5.1e-20 PF00165: HTH_AraC" amino acids 1375 to 1410 (36 residues), 28.2 bits, see alignment (E = 5.5e-10)

Best Hits

Predicted SEED Role

"two-component system sensor histidine kinase/response regulator, hybrid ('one-component system')"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1417 amino acids)

>ABI39_RS09010 response regulator (Phocaeicola dorei CL03T12C01)
MKTYICLLWVVFGCIGWEMHASVDVHPTFITTSDGLANNSVRYLFQDSKGFIWMGTLDGL
SRYDGHSFVTFRPESGDKISLANHHVKKIQEDRNGFLWFITAPELMSCYDLKHDCFVDFT
GCGEYRRPYNKILETAVGDIWLWHHQSGCRKIVCKDGIHSSVSFTKENGKLSTNAVNSVY
EDEQGVIWICTQLGLFQVTEEGYTQVVQDSLSFVGAMSFRHKIFFVTSDGGIYEKSSGKN
LFLTARLPWKLSAFNTYESCRLQNDWVFFTPEGGEVFSMSEKRLIHDSSLDIRLGKCEKD
NLNNLWISNGTGLVHYIDVRTRAVRIFRLMSDEKVKLIGDERYHIIQDVPRGLIWISTYG
NGLFVYDSQKEEMTHYSYHVDEFNRVNSDFLLYAMGDRTGNIWLGSEYSGIALLSVLNDG
ATYIYPENEKLVDRSNTIRMVTCMENGDVRVGNRRGGLFAYDCHLNLLQRNYYHLSVFAL
KEDDKGQVWMGTRGNGLCIGDRWYVHRADDVNSLAHNHIYDIYRDYRDRMWIGTFGGGLD
LAVYQKNDFVFRHFLKGSFGEQEVRTITADRNHWMWVGTNNGIYVFHPDSLLNDSRQYYV
YNLDNGKIRSNEIRNIFCDSKGRMWIGTTGKGFSVCQSGQTYDQLEFRHYDEDDGLVNNV
VQSIVEDRDGKIWLGTEYGMSRFDPDTEVFDSFFFSAIMPGNVYLESSACVMKNGHLLFG
TNHGLVVVDPEKVMPQHVVSPVVLTDLKINGISVRPGDIDSPLTEALSYTNRIELKYYQN
SFSIDFSTFDYSMANDAKYIYKLIPYDKDWGVPSSLNFAAYKNLLPGTYQLHVKASSASG
VWGEDETVLQIVITPPFWKTGWAFAIYIMLICMAMYMTFRLIHKFAILRNRIQLEKQLTE
YKLVFFTNISHEFRTPLTLIQGALEKIEAMGRGSKELAYPIKVMDRSTQRMLRLINQLLE
FRKMQNNKLVLSLEETDVIVFLYDIFLSFRETAESKEMEFKFIPSVSSYPMFVDKGKLDK
IVYNLLSNAFKYTPEGGKIVCSVDVEEETKKLIISVSDTGIGIPLEKRGQLFSRFMQSSF
SGDSMGIGLHLTHELVNVHKGSIEYAENEGQGSVFTVTLPLDSSVYESKDFLISTALMEE
TDHTDEGIPCRLVKEEQMAAPLNKKKILIIEDDTDIREFLKKEISVYFEVVAEADGVAGF
ERARTYDADLIICDVLMPGMNGYEVTRKLKNEFSTSHIPIILLTAMGTTENKLEGVESGA
DAYVTKPFSLKLLLARMVQLIDQREKLREKYVNDPSIERPAIYTSDKDKQFLDKLQAIIE
QELGNSEFTMEDFAARMKLGRTVFSKKVRGLTGHTPNEYFRIIRLKKAAELLLEGNYNVS
EVSYKVGISDPLYFSRCFKTHYGVSPSVYLRGKEKEI