Protein Info for ABI39_RS07825 in Phocaeicola dorei CL03T12C01

Annotation: sodium-dependent transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 42 to 66 (25 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 146 to 164 (19 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 217 to 240 (24 residues), see Phobius details amino acids 252 to 276 (25 residues), see Phobius details amino acids 305 to 327 (23 residues), see Phobius details amino acids 349 to 370 (22 residues), see Phobius details amino acids 389 to 408 (20 residues), see Phobius details amino acids 428 to 448 (21 residues), see Phobius details PF00209: SNF" amino acids 6 to 118 (113 residues), 81 bits, see alignment E=4.3e-27 amino acids 150 to 450 (301 residues), 107.9 bits, see alignment E=2.9e-35

Best Hits

KEGG orthology group: K03308, neurotransmitter:Na+ symporter, NSS family (inferred from 99% identity to bvu:BVU_1490)

Predicted SEED Role

"Putative sodium-dependent transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (454 amino acids)

>ABI39_RS07825 sodium-dependent transporter (Phocaeicola dorei CL03T12C01)
MQKSERVNFGSKIGAVLAAAGSAVGLGNIWRFPYETGNHGGAAFILVYLACVLMLGMPIM
IAEFTVGRHSKASTGRAYKVLAPGTHWKWLGYLGVLAGFLILGYYSVVAGWTLEYILEAG
VNGFADKKPEDFVVAFQSFSKDPVRPLIWLVIFLLVTHFVIVKGVKDGIEKSSKVLMPVL
FILIVVLVGCSLSLPNAEKGLEFLLKPDFSKVNGDVFLGAMGQAFFSLSLGMGCLSTYAS
YFGKETKLGNTALSVGVIDTFVAVLAGLIIFPAAFSVGIQPDAGPSLIFITLPNVFQQAF
SGVPILAYIFSVMFYVLLALAALTSTISLHEVVTAFLHEEFNLTRGRAARLVTFGCIIIG
VISSLSLGVMQKYTLFDKGFFDLLDFVTAKIMLPLGGLLVCIFVGWYLKRSVSYEELTNG
GKLKAGLFNLYIFLLRYVAPVAIILIFINELGLI