Protein Info for ABI39_RS07710 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1077 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 29 to 1077 (1049 residues), 906.5 bits, see alignment E=2.9e-276 PF13620: CarboxypepD_reg" amino acids 30 to 89 (60 residues), 38.8 bits, see alignment 2e-13 PF13715: CarbopepD_reg_2" amino acids 30 to 111 (82 residues), 73.8 bits, see alignment 1.9e-24 PF07715: Plug" amino acids 119 to 225 (107 residues), 64.2 bits, see alignment E=3e-21 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 201 to 231 (31 residues), 62.1 bits, see alignment (E = 3.2e-21) PF00593: TonB_dep_Rec" amino acids 452 to 1027 (576 residues), 73.7 bits, see alignment E=5.6e-24

Best Hits

Predicted SEED Role

"TonB family protein / TonB-dependent receptor" in subsystem Iron acquisition in Vibrio or Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1077 amino acids)

>ABI39_RS07710 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MKWHPEIPRILSFGILVTFTMMLFAQGKNISGTVCDKNGENIIGASVLVKGTTNGTITDF
DGNFVLRNVADNAILQISFVGYETLDISVKGQSNIKVVLTEDTETLDEVVVIGYGSVKKS
TLTGAVTKMDSKGIENRPLARAETALQGQLAGVQVRTTTGEPGADLQIRVRGAASVNASS
DPLYVVDGVPMSTLSGVNPSDIQSIEVLKDAASAAIYGSRGSNGVVMVTTKTGKSGKPKI
SFNASYGVQQLEKKMDLLSSTEWMEFKLKWLDANYLAQARSKGVTNASIADSNETRLANL
GIQEGTSASYNYAFDERWFKYLGKDIQDSHTYTNNPEELCLLDWQDEFFRNAIVQDYSLS
VSGGTENTSYLFSGGYMDQEGIATGTNYERYSFRTNLESKINKYIAVGMNLAPTYIVQQG
SGLANGKDSEVHHVLTSAPVSEPGVGYMTNANGNLKYNWAGSASSPIYYMENNTNENRIM
RMTGNAFLRITPIKDLRIELSGSAQYYDKDSNTYYTTAASGNWAQGEGAKSSGSHLTERT
WETLLQAVANYDFSFGGHTFNIMAGASSEKSNTGFSTNQSFSGPFPNDAIQGSFDGSKVS
VKTNTVTEKTQKNLASVFGRLQYNYKEKYMFSGSLRYDGCSIFGADNKWGVFPAVSAGWM
ISNENFFKKLNLPWWNTLKFRVSYGETGNNNISNTAAYATLSAVTYAGQAGYQANSLGNP
DLGWEKTKSADFAVDLGFVNNRIQLSLDYYTKRTSDLLYQVPVPGASGFSTVWDNLGDID
NKGFEIELNTKNLTGAFSWSTSLNISYNKNTVKSLGVDNTPVYSGFSSGQNSNVLMVGKP
INTFYMYDAIGVWKTQAEIDAYSTAHNGTPVTFQGSTVKPGDIRYADIDNNGYIDANDKA
YLGQPTPKYVFGMTNNFSYKNFDLSILLTAQTGGKIFGVFGRAFDRPSMGASSNVLGRWR
NAWWSETEQGDGKTPYILSTTTGTTLDSRWLYSSDYLRVKNLTIGYKIPINPKFVSYARI
YVSIENLARWDNYYGGYSPEAANTASSSSPGGQSAVGLDYGGYPIPRIYTIGINVNF