Protein Info for ABI39_RS07165 in Phocaeicola dorei CL03T12C01

Annotation: RagB/SusD family nutrient uptake outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 557 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF14322: SusD-like_3" amino acids 23 to 217 (195 residues), 91 bits, see alignment E=1.2e-29 PF07980: SusD_RagB" amino acids 319 to 556 (238 residues), 108 bits, see alignment E=7.3e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (557 amino acids)

>ABI39_RS07165 RagB/SusD family nutrient uptake outer membrane protein (Phocaeicola dorei CL03T12C01)
MNKLYKWCLLSCMAATLSSCNDFLTEENPSGLTADTFYKTESGAEALINSCYTPLRFWYG
QEYATSMTELGTDIFTRGNGCAEAELSDYNSSLQGSSNAITKEWERLYSALNTCNTALNR
LPSSELSASVKDIRMGEAYFLRALYLWHIVETWGGVYLTTEECTEPSGYVYRSSEKDFYT
QIIADLKEAVAKLPVSTSDYGRATKGAAEAFLARVYLYNKNYEEALKYARNVINNYGYSL
AEDYSDLCDIYKCNDVKENVFVCMYTKSEIFGTSIEEGPDGNPIIWRTPGNNPSHLLWVM
CYDQVLDKDGKKPVTRSIEYGRSFNRYMPTLYYLNLFDEKMDARYDDVFQQAWICNNTNS
TYISPGDTAIFFTKYSVSDAEEAKHDYITIDKDFVYNADGSVKNRVQNVTFKKFLDPSRE
SVNYTGSVRHGVVIRLAELYLIAAEAELFLNDNASGTSYINEVRRRAAIPGKEAAMEIKP
EQLTLDFILDERARELGGEQQRWFDLKRTGKLLERVKAYNPDAKVNIKEHHLLRPIPQTQ
LDAIINKEEFGQNAGYN