Protein Info for ABI39_RS06160 in Phocaeicola dorei CL03T12C01

Annotation: glycosyltransferase family 39 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 574 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 65 to 83 (19 residues), see Phobius details amino acids 89 to 107 (19 residues), see Phobius details amino acids 113 to 130 (18 residues), see Phobius details amino acids 136 to 153 (18 residues), see Phobius details amino acids 165 to 193 (29 residues), see Phobius details amino acids 205 to 226 (22 residues), see Phobius details amino acids 257 to 281 (25 residues), see Phobius details amino acids 312 to 330 (19 residues), see Phobius details amino acids 336 to 356 (21 residues), see Phobius details amino acids 367 to 386 (20 residues), see Phobius details amino acids 419 to 440 (22 residues), see Phobius details amino acids 447 to 467 (21 residues), see Phobius details PF13231: PMT_2" amino acids 62 to 220 (159 residues), 53.2 bits, see alignment E=2.2e-18

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_1078)

Predicted SEED Role

"Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (574 amino acids)

>ABI39_RS06160 glycosyltransferase family 39 protein (Phocaeicola dorei CL03T12C01)
MSDKKKAFWFIALLSTLVIIPFLGETIFYSKGEPREAIVAYSMLESGNWILPLNYGTDIA
YKPPFLYWSIAAISAIFGGVSEFSSRLPSAIAFLAMQFVFFGFVARYKNTKTAVITSLLL
LTSFEVHRAAVACRLDMLQVSFIVISLCLLFRWDEKGCKGIPWTAVVLMACGTLTKGPVG
SIFPCMCIGIYQLIRGRSFGKTFLSLFRIGLLSLIPLGIWFYAAWLQGGQPFMDLMLEEN
TGRFVGKMSYPSHHNPLWYNFLTIIWGWIPWTLVLLISLFGLKWNEMHLLPAGNSFTGRI
RKVWDNIRSQPPYSLFIWIVIIAIFVFYCIPKSKRSVYLLPIYPFMAVLIAQYLEALMQK
GAKVFKISAYIFASLCLLLTVVFFAVRCQMIPDSIWGNGRHAAENIAFMQALESTSFSIS
KWLIIVLPVVAAICTLRLVIKKSSTGSLLYGIIGCVLCLFVALDGVYQPTILAVKSDKHL
AEDIRKQVPEGVVYSYTDRMIRFYCTNYYMNNQMRNFTLENPQEGYVILSANAQEEFLKN
YNAKYQLEEVFHTDYRSCDLRNTVIMYKFNEKRK