Protein Info for ABI39_RS05860 in Phocaeicola dorei CL03T12C01

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1328 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 777 to 795 (19 residues), see Phobius details PF07494: Reg_prop" amino acids 34 to 56 (23 residues), 23.9 bits, see alignment (E = 1.3e-08) amino acids 302 to 324 (23 residues), 15.4 bits, see alignment (E = 7.6e-06) amino acids 396 to 417 (22 residues), 15.5 bits, see alignment (E = 7.2e-06) amino acids 530 to 553 (24 residues), 20.1 bits, see alignment (E = 2.3e-07) PF07495: Y_Y_Y" amino acids 703 to 766 (64 residues), 79.8 bits, see alignment 5e-26 PF00512: HisKA" amino acids 821 to 886 (66 residues), 51 bits, see alignment 5.6e-17 PF02518: HATPase_c" amino acids 934 to 1040 (107 residues), 93.2 bits, see alignment E=6.7e-30 PF14501: HATPase_c_5" amino acids 938 to 1026 (89 residues), 25.3 bits, see alignment 5.3e-09 PF00072: Response_reg" amino acids 1080 to 1189 (110 residues), 86.8 bits, see alignment E=5.2e-28 PF12833: HTH_18" amino acids 1245 to 1322 (78 residues), 63.9 bits, see alignment 6.2e-21 PF00165: HTH_AraC" amino acids 1287 to 1322 (36 residues), 39.4 bits, see alignment (E = 2.1e-13)

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_1136)

Predicted SEED Role

"DNA-binding response regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1328 amino acids)

>ABI39_RS05860 response regulator (Phocaeicola dorei CL03T12C01)
MKRLVLLLLNLLMPMILFAASNDLCFRHFSVEDGLSSNSVRALMQDKYGFLWIGTDEGLN
RYDGTTVKLYRLKDRGANEAISSLYSTLNKIWIGTDEGIYIYDYETEDIMPFVLATSKNI
HIETNTNHIVEDKDKNLWFTTVGQGIFKYNTITNHLEQYEFKNANGLMASVLVDSENQIW
AITNWGNSGLFKLNKAENKFETFPLSYESGKHDSNALVMLEDSEHTLWLGTWECGLQKID
KYSGKATTYLHPTDGKGATHIHSIMEYAPHQLLIGSDDGLLLFNTITEEYQLFTEDETNP
HSLSNRFVYPIIKDHEGGIWIGTYYGGVNYISPNTGQFESFVHSRFSNSVNGTVIGRFCE
DSNGDVWIASDDGGLNRFSPKNRKFSHYLPLEGKNSLSYHNVHALCMDGDNLWIGTYTGG
VNVLNLQTGTFKTYSAYQDNPASLDGTSSYAIFKDRKERIWVTSMSGVNLYNREKDNFTR
IKYLDALTIDIDQDTKGNLWFSTQGKGLFKYHPEKQIWKNYIHDHKNPNSLANNQVNCVL
IDTNGEMWVGTMNGLCKYNAEEDAFETLPLEIPSHNICSIIEDQRILWLTTTKGLVRYTP
GEGCRVFTKSDGLQSEQFLPNAALKASDGKIYIGSVNGFNAFYPHQIKTNVMLPPVIITE
LEIDNKEIQTGNKLLPKSLNQLEELELSYKENAFSLLYASLSYCTPNKNKYAYKLEGFDK
DWNYVGSQNKATYTNLPAGTYLFKVKATNNDGIWNEKGTSLKITIHPPFYWSTASKLLYF
ILVCIAFGFVIRFIIKRTEKKHTAEINKLNANKEKEVHEAKIKFFTMIAHEIRTPVSLII
GPLEKIMKSPVSLPSTVRDDLNIIDRNSQRLLFLVNQLLDFRKVEQEGMKMKFASQNIHQ
LLKAVCERFEPFIAQHGARLTVEYPEADFTAIVDSEAVTKLVSNLLTNASKYTKDEVTLT
CIVQPEQHTFIIRVTDNGIGISKEEQKKIFHPFYQAMDNKPGTGIGLSIVKSIVESHNGC
IEVESEVNKGSSFIVTLPVEQAQVLPQDTGTSLLNNPAIPEGILQEDLSGSPIKHKPTML
IVDDNEEMLNFLSSSLADKYSILTAEDGIEALNKLKENEVTLIVSDWMMPRMDGVEFCKA
IRTNQTTSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRNLLR
QKFSKMPLVPLNSIANNSMDDKFLTRMNEIIEENFSNPELSVDFLAEKLCISRSGLFAKI
KTLANITPNELIQVVRLKKAAILLAENKYRINEICYMVGFNNPSYFSKCFQKQFGMKPGE
FVNGKREE