Protein Info for ABI39_RS05725 in Phocaeicola dorei CL03T12C01

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1327 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 773 to 791 (19 residues), see Phobius details PF07494: Reg_prop" amino acids 33 to 55 (23 residues), 25.9 bits, see alignment (E = 2.3e-09) amino acids 206 to 226 (21 residues), 17.2 bits, see alignment (E = 1.6e-06) PF07495: Y_Y_Y" amino acids 702 to 756 (55 residues), 28.6 bits, see alignment (E = 3.9e-10) PF00512: HisKA" amino acids 816 to 874 (59 residues), 35.1 bits, see alignment (E = 3.8e-12) PF02518: HATPase_c" amino acids 925 to 1036 (112 residues), 92.7 bits, see alignment E=7.1e-30 PF00072: Response_reg" amino acids 1079 to 1188 (110 residues), 90.5 bits, see alignment E=2.9e-29 PF12833: HTH_18" amino acids 1245 to 1322 (78 residues), 75.6 bits, see alignment 1.1e-24 PF00165: HTH_AraC" amino acids 1287 to 1322 (36 residues), 38 bits, see alignment (E = 4.6e-13)

Best Hits

KEGG orthology group: None (inferred from 96% identity to bvu:BVU_1150)

Predicted SEED Role

"FIG00407374: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1327 amino acids)

>ABI39_RS05725 response regulator (Phocaeicola dorei CL03T12C01)
MKYFFLFLLLFLGKYSVCAQHMISKQLPFFYQLSSNEIFDIYQDKEGYLWIGTTNGLARY
DGFRLQPFRADYKNLNLLTNNSISNIMDNDHYVWIGTWKGLNLYDKQTCKITPFPDARLL
DKGINYMAADKEDNIWIGAGNTIYRCNSTASIVKEYDIFGSQQNRHAINFVYQDREGNMW
ALTGGGLFRYDEKADSFVTYPPLGKNNAPYTMCQDQSGNYWIGTWGEGLWQFFPKKEGEE
CYKRHHIINSRSGETEPIFYSMTQDNTFGYLWLLSYNELYALQYTEEGTLVSVDIHDLVD
THMMYTKIMKDREGNLWLGSYDMAYTIFFDNSKIDNYPLPQLKKHMGWDANILNLCLDKN
DVMWVNQDRYGLCLYDLSQDLFADNSDNNLSNPGEVSIIVKSKLKEGVWISPRYGARVMR
MTHQDMKIQLEEDIDLEKQIHNPGNIRDLVEDNRGNLWIFTQSGLYVKRPDNFVLLAASS
DFPEMSSLTSDEEGNIWGMSTDKKVYRLSCIDRNISYELKGCIPVLSGQENVNHVCIDRK
GCLWLVSSLGRIFKSDTDKETFENMALDNRIDDCSVLGLLADENNVWIITNKKVLQYDIY
QKICMNYATSDGNIWVDVFRYRAISKDRQGGLYVGGHRGFIHIQSGSVSSADKIQFSPVV
TDVKVENKSIFFAEDESLHTINRISLAPNSRNIEIFFSSLIYSLNSKVEMAYKLDGVDKD
WVYLSNDKNSAFYNQLKKGTHSFRLKWKYGQGKWTEGKVVLAIVQAPAFYETWLAYMVYL
VLIVLAVYLSFHTYAQRIKIKNEVKLKEELARTKLNYFTNISHELLTPLTVISCVTDHLE
QKVPAIRQQSVILKSNADKLKRLIQQILDFRKMDVGKMNLNVSEGNISEFIQNICKTNFL
PLAQKKGIILEIDIEPLEIKGYLDFDKLDKIIYNLLSNAIKYTPEYKCIKVNVYLINKEG
NKVLVIKIKDEGIGISPKEINHIFTHFYSSKKQVGIESNGIGLSLTKELVNLHHGTITVD
SELGKGTCFTVELPIDRTGYKHDEIVDEMEGVTMDITECAIVAEDDVSSDGATDKSTLLL
IDDNAELLYIMKEMFKEKYSVWTAADGQQAWDKLSNHEVNMIICDVMLPDINGWELCTRI
KSDLRFNHIPVIILTAKNGIDDRIASYDAGADGYIAKPFEMKVLFARVDNLIRSFKMRQA
AFRKEEDVNLETLAYPSADKLFLQSIIESIEQHLEESEFDLERLSGEMNMSKSTLYRKIK
SMTGLTPLDFVRNIKMKRACMMLLARTQTISEVAYAVGFSNPKYFTKCFKEEFGVTPTEY
QQSHIKA