Protein Info for ABI39_RS05630 in Phocaeicola dorei CL03T12C01

Annotation: permease-like cell division protein FtsX

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 159 to 179 (21 residues), see Phobius details amino acids 184 to 187 (4 residues), see Phobius details amino acids 190 to 204 (15 residues), see Phobius details amino acids 215 to 237 (23 residues), see Phobius details amino acids 250 to 274 (25 residues), see Phobius details PF18075: FtsX_ECD" amino acids 50 to 142 (93 residues), 62.7 bits, see alignment E=4.1e-21 PF02687: FtsX" amino acids 166 to 282 (117 residues), 34.1 bits, see alignment E=2.5e-12

Best Hits

KEGG orthology group: K09811, cell division transport system permease protein (inferred from 100% identity to bvu:BVU_1169)

Predicted SEED Role

"Cell division protein FtsX" in subsystem Bacterial Cell Division

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>ABI39_RS05630 permease-like cell division protein FtsX (Phocaeicola dorei CL03T12C01)
MGKKSGSFFDMQFITSSISTMLVLLLLGMVVFFVLSANNLSKYVRENISFSVLISDDMKE
ADALKFQKKLNEEPFVKETSYISKEQALKEQSEAMGTDPAEFLGYNPFTASIEIKLNADY
ANSDSISWIEQKIMQNKKVMEINYPQDLLDAVNSNIRKISFLLLGLAALLTLISFALINN
TIRLAIYSKRFLIHTMKLVGASWGFIRRPFLVRNIWIGILAAAMADAALIGMAYALVRYE
PELIEIITPMTMLMVMGSVFVFGVVITFMCAYISINKYLRMKASALYYI