Protein Info for ABI39_RS03580 in Phocaeicola dorei CL03T12C01

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 599 transmembrane" amino acids 28 to 47 (20 residues), see Phobius details amino acids 52 to 70 (19 residues), see Phobius details amino acids 214 to 232 (19 residues), see Phobius details amino acids 238 to 257 (20 residues), see Phobius details PF05192: MutS_III" amino acids 125 to 179 (55 residues), 36.2 bits, see alignment 8.5e-13 PF00488: MutS_V" amino acids 423 to 583 (161 residues), 96.8 bits, see alignment E=1.7e-31

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_0776)

Predicted SEED Role

"MutS-related protein, family 1" in subsystem DNA repair, bacterial MutL-MutS system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (599 amino acids)

>ABI39_RS03580 hypothetical protein (Phocaeicola dorei CL03T12C01)
MELKAKYEQRIEQAEAELRQVKNKILRISTLRVLLFAAGIIGTIYFYQAGTTTICLTIAV
TFVPFLALVKYHNRLFFRKDWLETCIRVNSDELSALADNYEPFEDGKEFTNPAHRYSFDL
DLFGRHSLFQALNRTCTSFGKEKLAEWLQNHLEIKEEIIQRQEATKELAAYSDFRETFRI
TGLLYKGATSDREEIKEWTEAPAYFSKKWWSRPLLGIVPGVNIVLAMLGVAGVIPMTWFG
LAFGLFVIGSFGLIKPVSNLQRVYDKKLRILSIYAELISLIENREMNAPLLRHLKAEFGM
DGKSTTHILKELSRELDKLDLRNNQLLYVLLEGSMFWQLRQVMRIEQWRHKYGKYLLHWL
DVLGDIDALCSLATFAGNHPAYAYPAIAGKPFVFLAKDMGHPLMPARQCVTNDADIPSRP
FFVIITGANMAGKSTYLRTIGVNYVLACTGCPVCCSSLEIYPAKLVTSLRTSDSLTDNES
YFFAELKQLKQIIDRLNKGEELFIILDEILKGTNSMDKQKGSFALVRQLMELKTNGIIAT
HDLLLGKLIEYFPKEIRNYCFEADITNDELTFSYKLREGIAQNMNACFLMKKMGLIIND