Protein Info for ABI39_RS03555 in Phocaeicola dorei CL03T12C01

Annotation: DUF4252 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF14060: DUF4252" amino acids 31 to 149 (119 residues), 102.3 bits, see alignment E=1.1e-33

Best Hits

Predicted SEED Role

"FIG00415473: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (161 amino acids)

>ABI39_RS03555 DUF4252 domain-containing protein (Phocaeicola dorei CL03T12C01)
MKKFVFTLLLVFVCHLGYAQGINGLFNEFGSEKNADCVKVSSFMMSLGKMFAGHDEDAEI
IRKIKSIKVLDLESCTASVKERFNKKVNKLNLKGYDELMRVNDEGEKVRVLMKTKKETIR
ELLFVCTGKEDCTLVQINGKFTKDDIDKLVNQETGKKHGRR