Protein Info for ABI39_RS03470 in Phocaeicola dorei CL03T12C01

Annotation: glycoside hydrolase family 97 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 662 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF14508: GH97_N" amino acids 29 to 290 (262 residues), 172 bits, see alignment E=2.2e-54 PF10566: Glyco_hydro_97" amino acids 295 to 560 (266 residues), 264 bits, see alignment E=2.4e-82 PF14509: GH97_C" amino acids 562 to 658 (97 residues), 97.3 bits, see alignment E=7.8e-32

Best Hits

Predicted SEED Role

"Alpha-glucosidase (EC 3.2.1.20)" in subsystem D-Galacturonate and D-Glucuronate Utilization or Maltose and Maltodextrin Utilization (EC 3.2.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.20

Use Curated BLAST to search for 3.2.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (662 amino acids)

>ABI39_RS03470 glycoside hydrolase family 97 protein (Phocaeicola dorei CL03T12C01)
MKKKNIFLLLVTWCLCVFAQAQTPSAYELSSPNGQLALTIENGRVLQYSLSLEGKPVIHP
SAICMTMENGNIWGKNGEVVGTSTRSTSEKVYPVAGNYRELTDHYNELSLKFKDGYSVIF
RMYNEGMAYRFCGNLPEQDSLIVADEEASFNLGDDPAVILPETTDFTAWELSNVLYEGIS
KIEEHKYGITPTLFTNKMQNVRVVVAESDLNNYPGMYLRKEDGKMKGYWAAYPKKIEMGS
WGNFITVVKERENYLARTAGNHAFPWRIAIVAKDDKELLTNEMIYLLAKPQQIKDTDWIR
PGKATWEWWHCAILEKAPFPSGHQNLSTQMYKYYIDFASENKIPYLLVDAGWSNVFNHAD
LNKNIDIKEVIRYGKEKKVGVWLWTVAATLFQHPHCYLDSISKWGAVGVKIDFFDRDDAQ
IIPQYENLAKACAERHLMVDFHGCSKPTGLHRAYPNILSYEAMRCAECFKWDTTSNPDYQ
LQCIFARMLGGGIDYTPGSMRNSTLEKFKPIDPGLPSSLGTRSHELALFVVLSAPFASLC
DSPDEYRKYPDILKYLAEVPTSWDQTIPLAARVGEYAVLAKQKGNTWYIGGLNAWGERTI
QVDCSFLPQDKKYTIEIFQDKKRSNKNANLYEHKIMDIDNKNIIEMFMASGGGFVIVIRE
KK