Protein Info for ABI39_RS03360 in Phocaeicola dorei CL03T12C01

Annotation: MATE family efflux transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 transmembrane" amino acids 9 to 28 (20 residues), see Phobius details amino acids 48 to 69 (22 residues), see Phobius details amino acids 88 to 110 (23 residues), see Phobius details amino acids 130 to 150 (21 residues), see Phobius details amino acids 157 to 177 (21 residues), see Phobius details amino acids 183 to 206 (24 residues), see Phobius details amino acids 228 to 253 (26 residues), see Phobius details amino acids 273 to 293 (21 residues), see Phobius details amino acids 313 to 331 (19 residues), see Phobius details amino acids 345 to 365 (21 residues), see Phobius details amino acids 376 to 394 (19 residues), see Phobius details amino acids 400 to 425 (26 residues), see Phobius details PF01554: MatE" amino acids 14 to 174 (161 residues), 89.7 bits, see alignment E=1.7e-29 amino acids 246 to 390 (145 residues), 60.2 bits, see alignment E=2.1e-20 TIGR00797: MATE efflux family protein" amino acids 14 to 397 (384 residues), 184.5 bits, see alignment E=1.5e-58 PF14667: Polysacc_synt_C" amino acids 128 to 244 (117 residues), 37.1 bits, see alignment E=3.4e-13

Best Hits

KEGG orthology group: None (inferred from 93% identity to bvu:BVU_0637)

Predicted SEED Role

"BexA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>ABI39_RS03360 MATE family efflux transporter (Phocaeicola dorei CL03T12C01)
MNYTYRQIWLINFPIMMSVLMEQLINITDAVFLGHVGEVELGASALAGIYYLVTYMLGFG
FSIGLQVMIACRNGEQNYAETGRTFFQGLFFLSGLALSLYLLIQGLSPFLLKQLITSPEI
YQAITDYLDWRSFGLLFSFPFLALRAFFVGITKTRTLSWSAIAAVLINIPFNYLLIFTLK
FGIAGSAIASTLAEMVSLIILLVYMWRKIDKNKYGLQPVVDGKLLRRLFYLSVWSMLHSF
ISMAPWFLFFVAIEHLGKMELAVSNITRSVSTLFFVIVSSLGTTNSSLVSNLVGAGQRKG
VFPICHKIIKMGYAIGLPLVGIALLCNYWIIRFYTNNETLVQHTVPPFIVMLFNYVFAVP
GYVYISAVTGTGKTKIAFIFQMVTIMVYLLYLYWLSHCIYAPLAVYMTTEYLFVIMLGIQ
SVIYLKRKHY