Protein Info for ABI39_RS03030 in Phocaeicola dorei CL03T12C01

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1386 transmembrane" amino acids 29 to 47 (19 residues), see Phobius details amino acids 823 to 844 (22 residues), see Phobius details PF07494: Reg_prop" amino acids 65 to 87 (23 residues), 20.6 bits, see alignment (E = 1.6e-07) amino acids 112 to 132 (21 residues), 16.2 bits, see alignment (E = 4.3e-06) amino acids 192 to 210 (19 residues), 15.8 bits, see alignment (E = 5.9e-06) amino acids 232 to 252 (21 residues), 17.4 bits, see alignment (E = 1.7e-06) amino acids 474 to 495 (22 residues), 20.2 bits, see alignment (E = 2.1e-07) amino acids 521 to 543 (23 residues), 15.9 bits, see alignment (E = 5.3e-06) PF07495: Y_Y_Y" amino acids 754 to 819 (66 residues), 65.3 bits, see alignment 1.7e-21 PF00512: HisKA" amino acids 873 to 936 (64 residues), 34.8 bits, see alignment 6.4e-12 PF02518: HATPase_c" amino acids 982 to 1093 (112 residues), 77.9 bits, see alignment E=3.7e-25 PF00072: Response_reg" amino acids 1137 to 1247 (111 residues), 87.3 bits, see alignment E=3.7e-28 PF12833: HTH_18" amino acids 1305 to 1381 (77 residues), 64.7 bits, see alignment 3.6e-21 PF00165: HTH_AraC" amino acids 1345 to 1381 (37 residues), 38.4 bits, see alignment (E = 4.4e-13)

Best Hits

KEGG orthology group: None (inferred from 98% identity to bvu:BVU_0603)

Predicted SEED Role

"FIG00404296: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1386 amino acids)

>ABI39_RS03030 response regulator (Phocaeicola dorei CL03T12C01)
MEYLLKMLFFANIASNLKVESMHFAHRNCEYILGVIYLLCFPVWLWADNKVNTYHFKSIS
TSVNFPTNEVRKLFQDSQGYIWISTYNGLLRYDGYSIVVYKPDGVNHGRSIDSFVNMVAE
DKENNLWIGTHNGLYVLHKETDEIEKIISPLLQVSNVESILYASNGDLWVGSNKGLFRRK
AGSRTFDCEKTMDIKSVVEDRKGQIWIGTWEQGLLRYNPQEELYHTYEGINPGNSAHVIF
QDEAGNIWIGTWRYGLVKLINPYDPEHFSFKTFRNIKGNSHSLLDNIIYAIAQDKNSGKL
WIGSRSGVSILEDESGDGNFTNIVPGNLQGDLPFNEVNSLLCSKDGLMWLGMLGGGVCTV
NTNKFRFNYDSLEALREHCPTSSVRSVYQEDNGNLWMGIMGFGLVFYDMEQHTIVPYRSH
PVLKNMGYTSTVNDIIYRKRTNELCFATWDDGVWFYNVKAGKAHVVNTVTNPELSDICIY
SLLEDSKGNLWLGTRSGVFILDTEQRLHSLNELVTLTNQALPQISIFKMAEDQDGFIWIA
TSNEGVWRIDTSGETYKVKFYTPSDGTLSTIGAMSVCVDGYNRVWVGSNGNGLDLYDRKN
DRFVSVLNDYFRNGDVVFSMLEDDEHTLWLTTNAEMYHIDIPLDGAAPKIHTYTVDDGLQ
DHMFNRNSCFKGADGKLIFGGFRGLNSFYPDKIVQDTAYSPVVITDIKVHNVSVRTYPLS
IRKGIVANRAIDFIDKIVLGYRENNFSLDFSILNYINPELNRYLYRLEGYDKEWLSVEAG
RRFAYYNNLPAGTYTFCVKGANQNGIWSPDMKCLRITILPPPWLSWWAYCLYVLLFVSLA
WYTYRIVRNRIRMKQAIEMGKIERQKMEEINHAKLQFFTNITHELLTPLSIISASVDELK
QEVPASSSVCPVIADNTVRLIRLIQQILEFRKVENGKLRLKVSHGNVSMFLKKSVSAFAP
LVKKQKLSIQFDLSEEYSGYFDVDKLDKVVYNLLSNAAKYTPEGGTIVVSQAHDEERGTF
KLSVNNPGELIPKEKLDHIFERFYEGEYRKFHTIGTGIGLSLTKDLVLLHHGTIQVFSDK
EEGNTFVVEIPIRREAFDEDEVDENTENVDYAILSADEMENVSEIDMLEEKPAASTILLV
EDNEELLALMVRLLHGKYHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGMELCRRVK
TQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKRRKRMGVD
FRKQLVFEAKELNYTSMDEAFIRKAVDCVNAHLSDCDFEHAQFMAEMGMARTTLADKLKL
LTGLTPSAFISNVRLQAACRLIDEKRKIRIADLAYAVGFNDPKYFSSCFKKKFGLSPTEY
MMKYDG