Protein Info for ABI39_RS02815 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1073 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 27 to 1073 (1047 residues), 893 bits, see alignment E=3.4e-272 PF13715: CarbopepD_reg_2" amino acids 29 to 110 (82 residues), 76 bits, see alignment 2.8e-25 PF13620: CarboxypepD_reg" amino acids 29 to 99 (71 residues), 47.2 bits, see alignment 3.6e-16 PF07715: Plug" amino acids 118 to 244 (127 residues), 59.9 bits, see alignment E=4.9e-20 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 220 to 250 (31 residues), 67.1 bits, see alignment (E = 9e-23)

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_0540)

Predicted SEED Role

"SusC, outer membrane protein involved in starch binding"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1073 amino acids)

>ABI39_RS02815 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MKKNLFNVFLVCVFCMAAIPDMFAQQIKVTGKVTDSTNEGMPGVNVQVKGTTTGTITDFD
GNYSIDVPDSKSTLVFSFIGYVTQQLPVGGKKVLNVQLKDDTQTLDEVVVVAYGTARKSD
LTGATASLRPDANDASKTASFNNLLQGKVAGLNVTSSMAAPGAASSVTIRGANSLRGDNQ
PLYVIDNVPQSSTGEFAESAMGGGDFQIAQDPLSALNPADIEDITVLKDASATAIYGSRG
ANGVIIITTKKGKAGKAKVNVTANFTIADARNLHNMLNLEQYAAYANMKANSGEEKYYPQ
ANGEMHYVYGENLDKYKKDPTNPEYYRVLSYKNWQKEAYSSAFSQVYSASVSGGSDAMTY
YVSGGFKDIKGIVSNTGIKQGDLRANLTANLSKSVTMALALNGSIKQNDMMTGGNTTGGI
AGSLARTVLDTAPYEIPADDPTLQTDMDAKTTVYSWRDDYDDITDDKSFGGSLDLKWNIC
KYLSYNLRAGGNVNINERARWYGMQLTIGANDQGVLAMANLNKTNYNIENLLNLNIDLAK
GIHLGATAGVTYDGHTFLNKNVKGTRFSNFDLRTKGLHLASVKTHEQPTQKDYQLLSYLG
RINLSAYDKYLLTASVRADGSSKFKKGNRWSYFPSFSLAWRMEQEEFMKNINWLNQMKIR
LGFGVTGNQGINPYATFSDYSQIIDYAKATGDQILAMAVSNLQNDGLKWERTSSWNVGFD
FAFFNSRLSGSVDVYQKKTNDLLISRSLPASSGFASVMLNQGSLKNKGVEISLNGDILRN
LNGWSWSLGGNIGFNKSKIGDLGFAPTDFGTLKNVRGYQGTSIGDHFGIANLFIAGEAPG
LFFGYKTQGIIQPEDIVDGKVAYTAADGSTKYYSSSVANDLGAGNIKAVDMNEDGVVDEK
DKTILGNPNPDFTYGFQTRIAWKDLSVSASFNGVHGNQILNTNIRYYTPSRQAGNLTQEA
FRNIWTEENHSNLYPSATANVKNVVYDRYIEDGSYLRCSDITLNYTLPKSWMKKIGFQNI
GVFASVKNAFVITNYSGYDPEINSFAFDGLRPGIDMNAFPSQRSYVFGLNVAF