Protein Info for ABI39_RS02565 in Phocaeicola dorei CL03T12C01

Annotation: helix-turn-helix domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 946 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 777 to 799 (23 residues), see Phobius details PF07494: Reg_prop" amino acids 84 to 105 (22 residues), 20.5 bits, see alignment (E = 7.6e-08) PF07495: Y_Y_Y" amino acids 708 to 768 (61 residues), 58.1 bits, see alignment 1.4e-19 PF12833: HTH_18" amino acids 863 to 941 (79 residues), 83.2 bits, see alignment E=2.7e-27 PF00165: HTH_AraC" amino acids 904 to 940 (37 residues), 40.1 bits, see alignment (E = 5.9e-14)

Best Hits

KEGG orthology group: None (inferred from 94% identity to bvu:BVU_0494)

Predicted SEED Role

"FIG00408780: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (946 amino acids)

>ABI39_RS02565 helix-turn-helix domain-containing protein (Phocaeicola dorei CL03T12C01)
MILIESTMKYILTFILSFLSFLVCSQNITITDIPTIDQLPVNAIHRVFRDSEGYMWYGTV
NGLCRDDGYHVKVFRSDIDTPGLLEDNLVECIAEDKKGNIWFGTDKGAYILNKSDYSVHP
IDPKRLKNIPVMYLYATSDGSMWLGYRSVLAKYDTNGQLVKEYPIRNEHGGASISGFCES
RNHEIIISVWNGRVYHLDKEKDEFIPYPDKMRSRNPTVMVQDNEQDYFWLATWGDGVVRF
DPSAPGDSMFVYSEIPVNAAGEEDGLILSLAQDDKLGYIWLTTGHDFMALQIQPDRTLKQ
LKFPAGLLPVNHMLVEVLKGKECLWVSAFDRPSFILHLMDNITKDYALPALADRVNRSPA
IMALCDDGDGMMWMMQERTGLALYDLKQDKVKIYSDFPALASLPLNNGREMTRARINNGV
WVAKDLNRWVYGMARQGMEMHLKDVIDLNGQVEQNATVTKLYEDSHGILWIGLSKGLCSY
DVRQKRVKRVYPDVGHVMGIVENKEGLIWICTQDNGLFQTTADEKLRSFKLEKNFSCLSI
APDGILWLGTCDGGVYSYDPSENKLLCYNGACGMNGNQVNQIVADAYNHIWIDTNQKLIE
FNPRNGSFRTYLTTDGSILLHRFLPTAVCQAKDGNIYWGGIPGICMVTPSNGLERKASAV
KTKITDIKLQGESLIFGDRKSSNSINRIELHPDDQNLEISFSSLNHRYASKIRYAYRLIG
VDKAWVYVEGGKNSAFYNHLSKGTYTFQVKATDENGLWSKEVTELTIRRLPAFYETWWAY
LFYVLIVMGVSGYSLYLYLKRVDRKNNEMWADSKEMIKMRIYLDSKVNLPEPEFVQLDKL
LLEKAVKAVEDNLTEPDFDVTALADAMNMSRSTLTRKLKAITGRTPLDFIRNIKMKHARH
MLEDKDKSVTEVAATLGYFNRKYFTTCFKEEFGMTPSEFQKSQHEE