Protein Info for ABI39_RS01380 in Phocaeicola dorei CL03T12C01

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 416 transmembrane" amino acids 34 to 53 (20 residues), see Phobius details amino acids 196 to 220 (25 residues), see Phobius details amino acids 243 to 264 (22 residues), see Phobius details amino acids 281 to 304 (24 residues), see Phobius details amino acids 311 to 330 (20 residues), see Phobius details amino acids 372 to 389 (18 residues), see Phobius details PF12698: ABC2_membrane_3" amino acids 34 to 385 (352 residues), 192.1 bits, see alignment E=1.5e-60 PF01061: ABC2_membrane" amino acids 200 to 355 (156 residues), 32.2 bits, see alignment E=7.8e-12

Best Hits

KEGG orthology group: K09686, antibiotic transport system permease protein (inferred from 98% identity to bvu:BVU_0262)

Predicted SEED Role

"ABC-type multidrug transport system, permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (416 amino acids)

>ABI39_RS01380 ABC transporter permease (Phocaeicola dorei CL03T12C01)
MRAYKLKDIISQGTKDLFYIWWQELKAVVKDQGVLIFFILVPLGYPLLYTFIYTNETVRE
VPAAVVDNNRSSLSREYLRLVDAGADLEIVSHCSDMEEAKTLLKNGKVYGIIYIPESFSR
DITKGVQTHVTIYCDMSGMLYYKAMLTANTNASLMMNKQIKIERSDNTTIRQDEVSTSPI
AYEDISIFNPQNGFASFLIPAVLILIIQQTLLLGVGLSAGTARENNRFRDLIPMSRHYHG
TLRIVLGKSLTYLMIYAVMATYMLCLVPKMFSLVQIAQAGTLAAFMFPYILACIFFAMTC
SIFIHHREACMMIYVFTSVPLLFISGISWPGTAIPKFWEVISWLFPSTFGINGFVRINNM
GATLTDVLTEYRILWIQTGVYFLTTCIVYRRQITLSRRHVYERLKEIKKRRKTNIV