Protein Info for ABI39_RS01265 in Phocaeicola dorei CL03T12C01
Annotation: TolC family protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K03287, outer membrane factor, OMF family (inferred from 100% identity to bvu:BVU_0239)Predicted SEED Role
"Outer membrane efflux protein precursor"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (441 amino acids)
>ABI39_RS01265 TolC family protein (Phocaeicola dorei CL03T12C01) MKFYCKPTLTLFLLLYVAIQSAQAQDTLRITLQDAVRIALSDNPTIKVAGQEILLKKEAR REAYAGLFPEASLVGSYSRAIKKQSFAMMGEVIEVGTDNTYSGGLSVSLPVFAPALYKSI SLTSTDVNLAVEKSRASRLDMVNQVTKAFFQLLLAQDSYEVLLKSYKQSEDNYNVVKAKY EQGTVSEYDKISADVQMRSLKPTVVSARNGVNLANLQLKVLMGMESDVKVAVEGNLKDYE MSMFTRQAMPRPDNLINNSTLKQLELNALQLKQTLKLQYTNFMPTLSASFQYMYTSMNDN FKFKEYDWRPYSTIGLNLSIPLFKGSNFTQLKQTRIQMKQLEENRINTERQLTMQATSYL DNMAASTEQVVSNKEAVFQAEKGRTIAEKRYEVGKGTILELNSSEVALTEAQLTYNQSIY DYLVAKADLDLVLGIDEVTEQ