Protein Info for ABI39_RS01180 in Phocaeicola dorei CL03T12C01

Annotation: L-fucose:H+ symporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 transmembrane" amino acids 7 to 27 (21 residues), see Phobius details amino acids 50 to 67 (18 residues), see Phobius details amino acids 75 to 93 (19 residues), see Phobius details amino acids 99 to 120 (22 residues), see Phobius details amino acids 140 to 160 (21 residues), see Phobius details amino acids 191 to 210 (20 residues), see Phobius details amino acids 246 to 266 (21 residues), see Phobius details amino acids 279 to 301 (23 residues), see Phobius details amino acids 309 to 329 (21 residues), see Phobius details amino acids 335 to 354 (20 residues), see Phobius details amino acids 366 to 386 (21 residues), see Phobius details amino acids 392 to 412 (21 residues), see Phobius details TIGR00885: L-fucose:H+ symporter permease" amino acids 6 to 412 (407 residues), 327.9 bits, see alignment E=1.1e-101 PF07690: MFS_1" amino acids 12 to 374 (363 residues), 80.5 bits, see alignment E=5.8e-27 TIGR01272: glucose/galactose transporter WARNING" amino acids 90 to 410 (321 residues), 218.2 bits, see alignment E=1.9e-68

Best Hits

KEGG orthology group: K02429, MFS transporter, FHS family, L-fucose permease (inferred from 98% identity to bvu:BVU_0221)

Predicted SEED Role

"Fucose permease" in subsystem L-fucose utilization or L-fucose utilization temp

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (419 amino acids)

>ABI39_RS01180 L-fucose:H+ symporter permease (Phocaeicola dorei CL03T12C01)
MKNKTYYVPLMLIFCLFFLWAISSNLLPTMIRQLMKTCELNAFEASFTETAYWLAYFICP
IPIAMFMKKYSYKSGIIFGLLLAACGGLLFFPAAMLKEYWAYLCIFFIIATGMCFLETAA
NPYVTALGDPESAPRRLNLAQSFNGLGAFIAAMFLSKLILSGNHYTRNTLPASFPGGWEG
YIQTETDAMKLPYLLLAMLLIVIAIIFIFSKLPKIKEGNTMEGVEYKGEKLIDFGVLKRS
HLRWGVIAQFFYNGGQTAINSLFLVYCCTYAELPENTATTFFGLYMLAFLAGRWTGTLLM
VKFRPQDMLLVYALINVLLCIVVVCFGGWTGLYAMLGISFFMSIMYPTQFSLALTDLGSN
TKSGSAFLVMAIVGNACLPQLTAYVMHLNEHIYYIAYAIPMICFLFCAYYGWKGYKVID