Protein Info for ABI39_RS01155 in Phocaeicola dorei CL03T12C01

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1023 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 33 to 1023 (991 residues), 998.5 bits, see alignment E=4.5e-304 PF13715: CarbopepD_reg_2" amino acids 35 to 114 (80 residues), 66.9 bits, see alignment 2e-22 PF07715: Plug" amino acids 122 to 228 (107 residues), 67.8 bits, see alignment E=1.7e-22 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 204 to 234 (31 residues), 58.5 bits, see alignment (E = 4.2e-20)

Best Hits

KEGG orthology group: None (inferred from 99% identity to bvu:BVU_0216)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1023 amino acids)

>ABI39_RS01155 TonB-dependent receptor (Phocaeicola dorei CL03T12C01)
MKNRLECMQSIRFLAVLLMCCLSYTTWAQTQSNVNGLVTDFSGEPLIGVSILVKGTSNGT
VTDLDGKFSLSAEMGNMLQISYVGYISQEVKVESDKLLRIIMEEDTKKLEEVVVIGYGTQ
KKVNLTGAVAAVSAEDLASKPVMSTAQALAGLAPGLSVLQTSGRPGQGATVKIRGTGTFS
KAGTDPLVLIDGLSGNIDDVDPNDIQSISFLKDAASASIYGNRAANGVILIETKKGAQGK
TTITYSNSFGWQQPTELPDFLPSWEYAEYYNMAMRNMGKQEAYLPEQIQKYRDGSDPDNY
PNVNHLKWLLESGSGFQHQHNLSIQGGNATTSYNLSVGYRNQEGMTAKTSNERMTALFTM
KSEIAKGLMLNLNINAYNNKYNAPNGEPQSIDGMIGYAVRQGPIYAGQKSDGSFGYQDNY
SPEAWLASESFVQNVSRNISASGQLTWNTPVDGLSFIGKVGMNYWTKYDKAYRADTYFDD
SKTVGPATLNVWTANNTYTTFEALATYEKQIKNHTFKLLAGTSVEQSNNKGLEGYRNTFP
NNYLYELGSGDKSTATNDSSLEEYALLSFFGRINYAWKDRYLLEVNLRYDGSSRFADGHR
WGLFPSVSAGWRISEEDFWKNAAVSAVVDNLKLRASYGVLGNQNIGVYPYQQIYELGHDY
PFGNPVTLQSGAYMKTYNNPEITWEKTAITDIGLDFSLLNGRFSGTLDYFYKYTSDILAP
VEVSSIMGREVGQSNVGAVSNEGIEINLTYNGQIGRDFRFSISPNFTWVKNAVEKLANGA
TEEINNNRIVGQPIGIIYGYETDGLFVDQAEIDAAPEQLVSKSGLKPGYVKYKDISGPDG
VPDGKVDAQYDRTVLGSTTPKFYYGLNLSTSYKGFDFSALLQGLGGHKRLIGSYMAYAFY
NGGQIQRWQAESCWKEENPDKWAEYPRLETLNMNDTNLQTSDYWVRNASFLRVKNIQIGY
TFPKAWTKKIGLENVRVYVSGQNLFSFNSFYKGWDPENEIGTGDSPSYYPVNSIYSFGFN
FKF