Protein Info for ABI39_RS01105 in Phocaeicola dorei CL03T12C01

Annotation: cation:proton antiporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 715 transmembrane" amino acids 16 to 33 (18 residues), see Phobius details amino acids 41 to 59 (19 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 96 to 115 (20 residues), see Phobius details amino acids 121 to 144 (24 residues), see Phobius details amino acids 155 to 177 (23 residues), see Phobius details amino acids 188 to 207 (20 residues), see Phobius details amino acids 219 to 237 (19 residues), see Phobius details amino acids 243 to 262 (20 residues), see Phobius details amino acids 274 to 292 (19 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details amino acids 337 to 361 (25 residues), see Phobius details amino acids 373 to 392 (20 residues), see Phobius details PF00999: Na_H_Exchanger" amino acids 20 to 393 (374 residues), 176.8 bits, see alignment E=6.5e-56 PF00582: Usp" amino acids 415 to 541 (127 residues), 24.6 bits, see alignment E=3.3e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to bvu:BVU_0204)

Predicted SEED Role

"Na+/H+ antiporter" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (715 amino acids)

>ABI39_RS01105 cation:proton antiporter (Phocaeicola dorei CL03T12C01)
MELFDLNIHFPVTDPTWIFFLVLIIILFAPMILGRLRIPHIIGMILAGVVVGKYGFNILE
RDSSFELFGKVGLYYIMFLAGLEMDMDDFKKNRTKGLIFGMFTFLIPMGLGIWSSMSMLD
YGFLTSVLLASMYASHTLIAYPIISRYGLSRQRTVSITIGGTAVTVVLALMVLAVIGGMY
KGEDVGGLFWVLLVAKVVLLFGLIIFLMPRISRWFFRTYEDAVMQFIFVLAMVFLGGGLM
ELVGMEGILGAFLAGLVLNRFVPHVSPLMNRLEFVGNALFIPYFLIGVGMIIDVRCLFTE
GEALKVAVVMTVVATFSKWLAAWITQKIYGMKKVEGSLIFGLSNAQAAATLAAVLIGHGI
IMENGERLLNDDVLNGTVVMILFTCIISSVVTERAARKMVTQENLMEGSEGKEQERILIP
VANPETIEGLVGMALMMRHPKQKESLVALSVINDNNTSETKELIGKRNLERTAMIAAAAD
ASVKTVLRYDLNIAQGIIHTQKEYAVTDIVIGLHRKTNLMDSFFGTMTENLLKGTNRQIM
IAKLLMPVNTLRRIVVAVPDKAEYEKGFLKWMTQLCRMGKQLGCRVHFFATEDTLKHLRA
LTEKQEANTFTEFSLLEEWDDLLLLTGQVNYDHLFVVVSSRKGSISYQTSFERLPSQISK
YFANNSLLIVYPDQLGDDPQEIVSFSDPRGQSETRVYDNVGKWFYKWFKKGDERN