Protein Info for ABI39_RS00430 in Phocaeicola dorei CL03T12C01

Annotation: DUF5110 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 823 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF13802: Gal_mutarotas_2" amino acids 42 to 201 (160 residues), 65.1 bits, see alignment E=2.2e-21 PF01055: Glyco_hydro_31_2nd" amino acids 243 to 598 (356 residues), 296.5 bits, see alignment E=5.8e-92 PF21365: Glyco_hydro_31_3rd" amino acids 610 to 711 (102 residues), 82.6 bits, see alignment E=4.6e-27 PF17137: DUF5110" amino acids 727 to 795 (69 residues), 86.2 bits, see alignment E=2.5e-28

Best Hits

KEGG orthology group: K01811, putative family 31 glucosidase (inferred from 86% identity to bth:BT_3659)

Predicted SEED Role

"Alpha-xylosidase (EC 3.2.1.-)" in subsystem Xylose utilization (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (823 amino acids)

>ABI39_RS00430 DUF5110 domain-containing protein (Phocaeicola dorei CL03T12C01)
MNFIKKMTLTLIGATIIATNGIAQSVQHTTQGITYTTQEIDVKVEFYSPTIVRIYKTPIK
KPYKKESLVIIKTPETTSVTFGEKGKNVTLSSNVIQVEVNPETGGIRFSDKEGKLLLTDK
DYGTQFTPFDDAGVPSYNVRQAFLLDKDEVIYGLGQQQTGKVNQRNQKLFLRNQNMSICI
PFIHSIKGYALYWDNYSPTTFVDNPQEMSFDSEVGDCADYYFIYGGNADKVIANVRELTG
QAPLYPLWALGFWQCRERYKSPDELCEVVDKYRKLKVPLDGIIQDWQYWGCDSNWNAMKF
QNPRYINKMGDKEYMKYLPNGEDKSARYGTPRIKTPKEMIDYVHKQNAHIMISVWASFGP
WTEMYQKMDSLKALLQFDTWPNNAGVRPYDPYNPVARDLYWSEMKKNIFDLGMDGWWLDS
TEPDHMNLKDQDFNTLTYLGTFRRVHNAFPLMSNKGVYEHQRATTSDKRVFLLTRSSFLG
QQRYASHSWSGDVVSTWEVMRKQLAAGLNYSLCGIPYWNTDLGGFFAWKYNNNVNNIAYH
ELHVRWYQWGVFQPIMRSHNSSPVAVEIYQFGQKGDWAYDALEKYTHLRYRLLPYLYSTS
WEVTSKAGSFIRPLMMDFPKDPKVLDMDTEYMFGHNFLVRPVTDSLYTWQDKNQNGYLKD
LKKIGNTEVYLPKGANWTDFWTGQTLEGGQTIQREVPIDIMPIYVRAGSILPWGPAVQYS
TEKKWDNLTIRIYPGADAEFTLYEDEFDNYNYEKGAYTTILMKWDDKERTLTINERKGNY
KGMLKNRKFNIILVEPGKGCGDEDSPTFDQSISYKGKQVNVKL