Protein Info for ABI39_RS00155 in Phocaeicola dorei CL03T12C01

Annotation: glycosyl hydrolase 115 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 864 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF15979: Glyco_hydro_115" amino acids 186 to 534 (349 residues), 472.8 bits, see alignment E=7.9e-146 PF17829: GH115_C" amino acids 682 to 853 (172 residues), 117.8 bits, see alignment E=4.7e-38

Best Hits

KEGG orthology group: None (inferred from 96% identity to bvu:BVU_0030)

Predicted SEED Role

"FIG00409119: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (864 amino acids)

>ABI39_RS00155 glycosyl hydrolase 115 family protein (Phocaeicola dorei CL03T12C01)
MKLKKCVGIFLFSTLCLNVGAIDHKGITFDQLAPDRFTLMENGVANEILVDEQEDAGVMI
AVRNLQNDFKRVSGRAAGLCYTPGVKRMIMVGTLKSRYIRELVKAKKIDASLLEGKNEKY
LMTVVSAPLNGVDEALVIVGSDKRGTIYGIYELSEQIGVSPWYDWADVPVMFRQNLSMTR
GSYTAGEPAVKYRGIFLNDEAPCLTGWVKHTYGTNYGDHRFYARVFELILRLRGNFMWPA
MWGWSFYADDPENSKTAHEMGIIMGTSHHEPMARNHQEWVRKRSEYGAWDYASNQQVIDR
FFREGMERAAGTEDLITIGMRGDGDTPMGGKEGEDDKYVPRDEENMRLMEKIFRNQRRII
KEVTGKVPEKRPQVWAIYKEVQRFYDMGLRVPDDVIMLLSDDNWGDVRRLPDAKERKRAG
GWGMYYHVDYVGAPRNSKWLNVTPVQNMWEQLQLTYSYGVDKLWILNVGDLKPMEYPITL
FMNMAWNPERYAAGDLLEHTRVFCAQQFGEEQADEAMRILNLYCKYNGRVTPEMLDKDTY
HLASGEWRQVADEYVKLEAEALRQYLKLDTAYRDAYRQLILFPVQVMANLYEMYYAQAMN
HKLYKENNPQANEWADKVEQAFRRDVELCREYNEEMSGGKWNGMMTQKHIGYTSWNDDFP
ADRLPEVYRIEQPEGAVGGYLFTGDKGVVSMEAEHYFTSSVAPKTAWTVIPHMGRTLSGV
ALMPYTQSAEGASLSYKMKIPQKVDTVNVYVIVKSTLPFLRREGHRYTVGFEGAEEQTVC
FNAELNEHPDNVYRVLYPTVARRVVKTRVKLSLPDCADGTYTLVLKPVEPAIVFEKIVVD
YGGYEDSYLFMNESPCRRNKLNEQ