Protein Info for A4249_RS16195 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: RHS domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1509 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF05593: RHS_repeat" amino acids 644 to 667 (24 residues), 23.2 bits, see alignment (E = 7.4e-09) amino acids 675 to 709 (35 residues), 30.6 bits, see alignment (E = 3.6e-11) amino acids 808 to 842 (35 residues), 23.9 bits, see alignment (E = 4.4e-09) TIGR01643: YD repeat (two copies)" amino acids 647 to 672 (26 residues), 22.7 bits, see alignment (E = 1e-08) amino acids 675 to 713 (39 residues), 28.5 bits, see alignment (E = 1.5e-10) amino acids 719 to 749 (31 residues), 17.5 bits, see alignment (E = 4.5e-07) amino acids 787 to 828 (42 residues), 18.3 bits, see alignment (E = 2.7e-07) amino acids 892 to 927 (36 residues), 27.1 bits, see alignment (E = 4.2e-10) amino acids 946 to 970 (25 residues), 21.2 bits, see alignment (E = 3.1e-08) PF03527: RHS" amino acids 1280 to 1311 (32 residues), 29.4 bits, see alignment (E = 5.7e-11) TIGR03696: RHS repeat-associated core domain" amino acids 1306 to 1382 (77 residues), 72.5 bits, see alignment 3.2e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1509 amino acids)

>A4249_RS16195 RHS domain-containing protein (Brevundimonas sp. GW460-12-10-14-LB2)
MTYLSRLCGAAALLLMLTLAAATGAQAQTSTLNSGWEDRGEFFSDPTSACRAQWVKSGMN
NGYSRFIGYSDAESNFVTKHCEWTSQQYLCPQETGGGVVNCGTVLPGSVSLSCISGSRAV
LPGSCVPVGDAFPERQNQCAAVSGKSINPSVGNPILLSSGSKLYDETDYETDDGLLRIRR
LYRSNPIGRSYSAHAPSGGLAGGWAFDFAYELQLDRLWGTSTSSPQVYLALVSPEGSAFD
YVMGSGNIVSPNTIDIAPVYAGSQYKIEFLGPMPATIGGLDDVSTQWKVTDEYDTVWTLQ
TFKSPVTGKFRTAKPIQRVLRGGYMWSLSYGADGDLQSITDSYGRVLSFSWSQYFKSSAP
SATGVLPYPEAVSEIELLDGSSLVYSYDPAPATAAPSTAKVERLTKVERLSSTNVVVNSR
AYHYENPTFPRHLTGITDHRDVRVATYGYDAQGRATSTEGANGVNRYAVEYGVYSDGLTR
RVTNPLGKDSIYKFQRFTTTALNDLRLVSVDGEASANCPESVQTVGYGSNRFVTNVVDEE
GVRRTTTRDARGRPTTVVEAAGTPSARTTQIVWHPTFNQPTQMARPGLTIDLTYNALGQI
ATRTLTDTTTITAPYSTGGRTRTWSYSWSSTGLLQSEDGPLPGNSDTTTYSYNASGQLTS
MTDPLGHVTQVTSRDASGAPLTVVDPNGTQTQFAYDLMGRLLTITTNPGSSQSQYALTYD
AAGNVTKLTLPRGGWLEVTYDGASRITAVKNSRNERIDYELNPVGESVRSTTRNPASSIT
QDQRQAYDELGRLIRLTGANAQNVLFGYDKVGSLVSATDAESESWSYTFDRLRRVLKETD
PEAVETAYSYAPNDALSSLEDGRDLTTNRVVDGFGLTIRETSPDRGTLTYWYDQRDLLVK
SQDADGVVHNYAYDANGRLLSETFSGASWENITYSYDNTAGGNKGIGRLTGVSDASGSHA
YVYDAQGRVTYDTQVIGGQLYVVSYAYDSNGDLASVTYPSGHIVNYARDNTGVTTSITAK
ASASSTAVSLVSNVTYMPFGPLSGMTFGNGLTTTRQFDQNYWLAGLTLGATGANRLNLAF
SRDLNGRLTGVTDNLATGRAAAFGYTDAGRIQYGVGPWGVNSYSYDGAGNRVEVRTEVGN
TASYEFALTPASNNRITEVRDTNWALKRQLAYRAGGDLSTQTFVGGATFEYLYGAHKRVL
GVKKNGADLSAYRYDYTGRRVSAQMLGSAPSLTHYVFANDGRLLAEYNANTGSMTREYAW
LDDMPMAILTGTGTTLTHLYIHTGQIGEPLMMTDASKAVVWSAAFDPWGQPAMLSPTATS
PLFMRLPGQWQQSETGLYQNWMRDYDPTLGRYVQTDPLGLYAGANLYAYVNGDPLQLTDP
TGECPWCWGAVIGGVVGAGGNLAWQLYQNGGDFDCVNPWEVLRWGVEGAFTGATLGQGTR
WALIGKEFKIGKNFRLAPFGNRGPGRTGAPHYHRRPSPNERGEVPSGQSINRHRPWQSHR
DDKSWWDRF