Protein Info for A4249_RS15310 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: lipocalin family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF08212: Lipocalin_2" amino acids 38 to 180 (143 residues), 123.1 bits, see alignment E=4.8e-40

Best Hits

KEGG orthology group: K03098, outer membrane lipoprotein Blc (inferred from 63% identity to bsb:Bresu_3152)

Predicted SEED Role

"outer membrane lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168NTM4 at UniProt or InterPro

Protein Sequence (183 amino acids)

>A4249_RS15310 lipocalin family protein (Brevundimonas sp. GW460-12-10-14-LB2)
MSSLKSLAASAAAAIALAGCVTAPSPSEYRAPQPAKPVDVQRLWSGRWHEIARLPDRLTD
GCVAGASIYTPVEGTRVDVRDTCQVGTPDGKEKAIGGRGEILDPGTNAKLRVKYLAGFVT
WDYWVLDRADDYSWFISADPTFNRLFIYTRDLPNEQQVRALTERARALGYDVSRLEFPAQ
PAR