Protein Info for A4249_RS15125 in Brevundimonas sp. GW460-12-10-14-LB2
Annotation: DNA recombination protein RmuC
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K09760, DNA recombination protein RmuC (inferred from 76% identity to bsb:Bresu_0668)Predicted SEED Role
"DNA recombination protein RmuC" in subsystem DNA repair, bacterial
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A160I209 at UniProt or InterPro
Protein Sequence (404 amino acids)
>A4249_RS15125 DNA recombination protein RmuC (Brevundimonas sp. GW460-12-10-14-LB2) MNMLVPILAVLAAAFAGGFLWAYMGWQKMSGALAAAEARIDLVEESRVTMGELLKAQAAQ SAQVVADQMVSRATETFRAQDQLARERMAAQLKPVADTLTKFQEHVAALEKTRSEETGGL REQLAQLMTASSATRDEARKLTEALRGNTGRRGRWGEQTCRNVLEAAGMAGRFDFTEQTS SADDEGRQNRPDFIVRLPGGGMFVIDAKVPLAFDDGEGDEEARARSVGLRTAASLKTHVR QLSSKAYQDQFKPSPDFVVLFVPGDAFLVTALDHEPDLMTQAMASRVVIVTPSTLFALCK AVAYGWRAEEQAANADKVAALGRELYKRLSVMGGHASAVGRALDTAVGKYNQFVGSLESQ VMVSARRFEDLQVDHEGKALPDLTPVETAPRAIARPELIAAKVE