Protein Info for A4249_RS14375 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: YdbH domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1065 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details PF11739: DctA-YdbH" amino acids 820 to 995 (176 residues), 65.6 bits, see alignment E=2.6e-22

Best Hits

KEGG orthology group: None (inferred from 58% identity to bsb:Bresu_0038)

Predicted SEED Role

"Putative uncharacterized protein ydbH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160I1D0 at UniProt or InterPro

Protein Sequence (1065 amino acids)

>A4249_RS14375 YdbH domain-containing protein (Brevundimonas sp. GW460-12-10-14-LB2)
MTDTPSKPKPQAKTRRILRAVAVGVLILALLIGVVAALIYLNRRAVARNVLVGWLDQRGI
PADVEVERIEIDGFVGRIRIGDPENPDVVVERAEVDYAVALPWSRSGLGVTPSRIRLLRP
VVRASWKGGKLSFGSLDPLIKEFTGGPPRPDSRGPLVIVEGGRGRLNTEYGPVDLLADAR
IDDGKLMRLAARLPKAALKSGETQAQGLSGLLDLTTTGDRMAIKLSAAADSFTTPAARGQ
GAALTLTGDLPYPDLKTRRGDGRAVLDARLTGERLGTSTLSARSADVAARFDGAVSGWIE
TFRLDGEVTTALKAAAVEGADLRIADVAATATRGKLTVSRDDAVRWRMQGPLALTAGSGR
TGQTTIGGLSLTSRDLALGGKDAAFEATGPLSATFDRFYFGDLALKRGRADVDLDVVSDG
GIQIAANGSLRAADGAWPLFGAVGADDIAELAEMKRALGRFALNAPAVRFATGAAGTTVA
LSRPVTLTPANGGVLTVAQGQGGAYQAEPGRLGGGALTLTATRGKGLPEMSVAVPNWRLT
EGGFEATLDGRARLDFDLARGIDARTRGVLALNAGPLTYATSDCVDLTVERLELDENDVH
QVAGKLCPQGVPLLTSRDGVWRVAGGFSQVSAQAPFLGMRFADAAGRVTIDGTKAGIGLT
ANVAAARVIDALTPERFEPLSASGSATLANERWSGAFDLKGTGAAAAYDLGRLTLAHDGR
TGSGGIVITAPKVTFAEHGLQPAMLSPLAADFLQSPVEGAVSFDGRFDWTKDAEPTSSGH
LVTPGLDFVSPVGAVKGLRGDIVFSSLTPLVTAPNQKLTADSLAVGTAVTALDVTFSINE
AGVLIDGAQVVAGGGTVSVEPFTVPLDASQPYSGVIVLDRVQLGDIVADTGFDDKVQLDA
VVSGRLPFIMDPKRGLKITAGKLEAVQPGRLSIKRDVLTDVAASGGGEVSENVVEDLAYQ
AMENLSFDQLSADVNSLDGGRLAVLFHIRGRHDPPKRQELRLTIGELISRQFLNRKLPLP
SNTQIDLTLDTTLNANQLISDLLAVNRARQGQQEATPAPVPAPAD