Protein Info for A4249_RS13350 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: 30S ribosomal protein S15

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 89 TIGR00952: ribosomal protein uS15" amino acids 5 to 89 (85 residues), 123 bits, see alignment E=2.4e-40 PF00312: Ribosomal_S15" amino acids 8 to 88 (81 residues), 122.1 bits, see alignment E=4.3e-40

Best Hits

Swiss-Prot: 84% identical to RS15_CAUVC: 30S ribosomal protein S15 (rpsO) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K02956, small subunit ribosomal protein S15 (inferred from 88% identity to bsb:Bresu_0215)

MetaCyc: 57% identical to 30S ribosomal subunit protein S15 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S15p (S13e)" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HZJ3 at UniProt or InterPro

Protein Sequence (89 amino acids)

>A4249_RS13350 30S ribosomal protein S15 (Brevundimonas sp. GW460-12-10-14-LB2)
MSVTAERKHEIIADNARSAGDTGSAEVQVAILSERIANLTEHFKTHKKDNHSRRGLLKMV
SQRRRLLDHLNKVDAGRYQALISKLGLRR