Protein Info for A4249_RS12210 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 309 PF02899: Phage_int_SAM_1" amino acids 13 to 100 (88 residues), 42.1 bits, see alignment E=9e-15 PF00589: Phage_integrase" amino acids 125 to 295 (171 residues), 123.6 bits, see alignment E=7.7e-40

Best Hits

Swiss-Prot: 50% identical to XERC_BRADU: Tyrosine recombinase XerC (xerC) from Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)

KEGG orthology group: K03733, integrase/recombinase XerC (inferred from 81% identity to bsb:Bresu_0556)

Predicted SEED Role

"Tyrosine recombinase XerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160I135 at UniProt or InterPro

Protein Sequence (309 amino acids)

>A4249_RS12210 tyrosine recombinase XerC (Brevundimonas sp. GW460-12-10-14-LB2)
MAGTELTASDALRAWLDHLAHERRLSPRTLEAYGHIGRLYVAFLERHRGEALSLKDMGTI
TAAEVRAHMAERRSGEHPLAARSLSQSLSAIRGFHAFLDRRLDTPSPQLALVRGPKVKPS
LPRPVTEDQARGLLAEPDADPDAEPWEAARDRAVLTLLYGCGLRISEAMSLTRADAPLGE
TLRIVGKGSKTRIAPILPAVRAAVDAYLALLPFPLQPADALFRARRGGPLSPRHVQASVQ
KLRGRLGLPERTTPHALRHSFATHLLGAGADLRSIQELLGHASLSTTQKYTGVDADRLLS
AYAAAHPRA