Protein Info for A4249_RS11545 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: L,D-transpeptidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 496 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF20142: Scaffold" amino acids 42 to 152 (111 residues), 64.2 bits, see alignment E=3.3e-21 PF01471: PG_binding_1" amino acids 209 to 245 (37 residues), 31.4 bits, see alignment 2.7e-11 PF03734: YkuD" amino acids 273 to 413 (141 residues), 73.7 bits, see alignment E=3.8e-24

Best Hits

KEGG orthology group: None (inferred from 59% identity to bsb:Bresu_1416)

Predicted SEED Role

"FIG00449544: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160I0U4 at UniProt or InterPro

Protein Sequence (496 amino acids)

>A4249_RS11545 L,D-transpeptidase family protein (Brevundimonas sp. GW460-12-10-14-LB2)
MANRRSFTLNRRHLLAAAAPLWLSTTARAASAPATSNITALTAAFYAARGGRPAWAGPAR
RQAMDALALADRHGLSAPDGLALGEAELTQAVLTLAEALAHGRVDPATVETLWEMDRNQV
DTPPLLAKAVEDGTLAETMAGLAPQDRGFQGLCDGFLRYRAIADRGGWPPFAMGATIEPF
ASDPRLPALLPRLRVEGDLSDAAASMIGPSGGDYGSVLQEAVRAFQVRHGLEADARIGPA
TQRALSISGEARARQIALNLERRRWLKRDVAPERIEVNTAASIMVYWKDGRPVHSMRVVT
GDADNATPSLERPFASVVANPPWTVPTSIAQREILPRGAAYMRANNMTIQNGMVVQRAGP
NAALGQVKFELQDSYAIFLHDTPSRGAFERSFRHLSHGCVRVQDAVGFARLLLAPDPARL
ARFDAALDSGETVRVATGRPIDVRLLYWTAFLDGQGRVAFRDDIYRRDTRLAEALGIALQ
LPRPDDRRADADDVGP