Protein Info for A4249_RS10385 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: DNA damage-inducible protein D

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 PF02498: Bro-N" amino acids 15 to 108 (94 residues), 32 bits, see alignment E=8.1e-12

Best Hits

Swiss-Prot: 61% identical to DIND_ECOLI: DNA damage-inducible protein D (dinD) from Escherichia coli (strain K12)

KEGG orthology group: K14623, DNA-damage-inducible protein D (inferred from 68% identity to cti:RALTA_A3210)

Predicted SEED Role

"DNA-damage-inducible protein D"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168NY92 at UniProt or InterPro

Protein Sequence (283 amino acids)

>A4249_RS10385 DNA damage-inducible protein D (Brevundimonas sp. GW460-12-10-14-LB2)
MTDIAPPHRQSFESIRHEDEGVEYWLARQLAPVLGYQDYRNFLSVIEKARVSAAAAGLDP
ADHFGDVTKMVDLGSGAQREVADVRLSRYACYLIVQNGDPSKPVIAAGQTYFAVQTRRQE
IADDPAFGGLSEDDKRLMLRREMAQHNTALASAARQAGVETGLDYAVFQDHGYRGLYGGR
TMRDIHALKGLKKSQKILDHMGSTELAANLFRATQAEDKLRRDGASTKAQANDIHHAVGK
KVRQTISELGGVMPERLPTPETSIGQLERAKAKALKGPSGEVE