Protein Info for A4249_RS09700 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: exodeoxyribonuclease VII small subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• TIGR01280: exodeoxyribonuclease VII, small subunit
  • amino acids 13 to 66 (54 residues), 83.5 bits, E=4.1e-28
• PF02609: Exonuc_VII_S
  • amino acids 14 to 65 (52 residues), 77.4 bits, E=3.4e-26

Best Hits

Swiss-Prot: 66% identical to EX7S_PHEZH: Exodeoxyribonuclease 7 small subunit (xseB) from Phenylobacterium zucineum (strain HLK1)

KEGG orthology group: K03602, exodeoxyribonuclease VII small subunit [EC: 3.1.11.6] (inferred from 83% identity to bsb:Bresu_2794)

Predicted SEED Role

"Exodeoxyribonuclease VII small subunit (EC 3.1.11.6)" in subsystem DNA repair, bacterial (EC 3.1.11.6)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.6

Use Curated BLAST to search for 3.1.11.6

Sequence Analysis Tools

See A0A168NY48 at UniProt or InterPro

Protein Sequence (83 amino acids)

>A4249_RS09700 exodeoxyribonuclease VII small subunit (Brevundimonas sp. GW460-12-10-14-LB2)
MTDTAAAIPADLSFEDALKRLETIVSRLESGQAPLEESIALYEEGAKLKAHCEARLKAAQ
LRVEKIVVGPDGQAKGVEAASFE