Protein Info for A4249_RS08930 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: COQ9 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 TIGR02396: rpsU-divergently transcribed protein" amino acids 13 to 191 (179 residues), 136 bits, see alignment E=7.1e-44 PF08511: COQ9" amino acids 121 to 187 (67 residues), 64.5 bits, see alignment E=2.8e-22

Best Hits

KEGG orthology group: None (inferred from 78% identity to bsb:Bresu_2240)

Predicted SEED Role

"RIKEN cDNA 2310005O14"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160I2I8 at UniProt or InterPro

Protein Sequence (215 amino acids)

>A4249_RS08930 COQ9 family protein (Brevundimonas sp. GW460-12-10-14-LB2)
MTETTDWADRTEQTVLDAAIARAPALGWNARLVREACEACGLSQGDEELLLPNGARDLAA
LLSRRHDARALAALGEIDAKSLKIRERIARAVSERMEAGAADLEATRRCAAFLALPVNAD
LGLKLAWESADHLWRWAGDEATDWNHYSKRTILSGILIPALTLRWFDGREAAEAFVARRI
ENVMAFEKWKAGKDFDAPFRKVSDALSRMRYGARV