Protein Info for A4249_RS08920 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 452 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 226 to 248 (23 residues), see Phobius details amino acids 276 to 299 (24 residues), see Phobius details amino acids 319 to 343 (25 residues), see Phobius details amino acids 353 to 372 (20 residues), see Phobius details amino acids 379 to 395 (17 residues), see Phobius details amino acids 404 to 426 (23 residues), see Phobius details PF12698: ABC2_membrane_3" amino acids 21 to 425 (405 residues), 144.8 bits, see alignment E=1.9e-46

Best Hits

KEGG orthology group: K01992, ABC-2 type transport system permease protein (inferred from 68% identity to bsb:Bresu_2242)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A161IWR8 at UniProt or InterPro

Protein Sequence (452 amino acids)

>A4249_RS08920 ABC transporter permease (Brevundimonas sp. GW460-12-10-14-LB2)
MNRTLLIARREYVAYAKTVGFWLSLLAFPLFAVLGGGIPALIKASEPIKSVAVIEEGPNA
TGLAAAVRASLQADVDRQNNRLREAAEKGQAGAGRAVASITGPKIRLVDAPPAIADAVGP
ARDEAIRKALDKQTSKARRLDAVVFLSRTDGKPAAQVWTARATDNDVSGFVRNALRDARR
TELLTAAGVAPAVAQEVQTFRPEVKSFSPSAASGGEVSMRDRIPSFIGLGVGFLLWSLVI
TGASILLNSVMEEKSNKILEVLLSSASATEILTGKVLGVALLTLTVMGVWGGIGAFTLIS
ASPETAATVGQVLLHDGLIFYFIAYMVGGYLMYAVLFAAIGAFCETPRDAQTLMGPIMMI
LVVPILVMQMALTSPDAPVVKVLSWIPFFTPFLMSARAPSDPPLVEVVLTLIGMFATAAF
MVWIAGRAFRAGALSDVKLSWKSFGRAITGQA