Protein Info for A4249_RS08855 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: L,D-transpeptidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 520 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF20142: Scaffold" amino acids 55 to 176 (122 residues), 72.6 bits, see alignment E=8.1e-24 PF03734: YkuD" amino acids 296 to 436 (141 residues), 78.6 bits, see alignment E=1.2e-25

Best Hits

KEGG orthology group: None (inferred from 75% identity to bsb:Bresu_1416)

Predicted SEED Role

"FIG00449544: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HZT9 at UniProt or InterPro

Protein Sequence (520 amino acids)

>A4249_RS08855 L,D-transpeptidase family protein (Brevundimonas sp. GW460-12-10-14-LB2)
MNRRQLGLGVATAAMTLGSAARAQQVFVQRGPEATAFYNSFNDQISRLPETQQADVRAFY
EMNGWRPVWNADRVRALNTVAAGANRHGLAGSDYFDFVGLAADPASADLRTTAAALAYAR
VLAEGKVRPETVEDLWEMQKNRVDLPRGLSDALTRNVLGQWYDGLAPTDIGYQNLSAGYV
RYRRLAAQGGWPRFTQGATIEPGNSDRRIPALIDRLTAEGDLSAADGARLKSQGLVYNAE
LQRAVQSFQNRHGLGADGRIGAGTQRSLGASAEDRARQIALNLERRRWLKREVAPERIEV
NTAAAIMVYWKDGKPVHSNRVVVGSAENQTPSLEKPFASVVANPPWYVPAGIARREILPK
GPGYLAANDMYVKDGTVIQRAGPRSALGYVKFELRDSYAIFLHDTPSKAAFNLSTRQRSH
GCVRVQNAVEFARLLLSPDPAKLAQFDTAQDTRETTRVTTGREISVRLLYWTAFVDGQGR
VAFREDVYGRDDKLAQALGIGVNLPKPIDDGRADANDVGP