Protein Info for A4249_RS08830 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: elongation factor P

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 TIGR00038: translation elongation factor P" amino acids 3 to 187 (185 residues), 229.5 bits, see alignment E=1.2e-72 PF08207: EFP_N" amino acids 5 to 61 (57 residues), 82.3 bits, see alignment E=3e-27 PF01132: EFP" amino acids 69 to 123 (55 residues), 67.9 bits, see alignment E=9.1e-23 PF09285: Elong-fact-P_C" amino acids 131 to 186 (56 residues), 78.1 bits, see alignment E=5e-26

Best Hits

Swiss-Prot: 66% identical to EFP_PARL1: Elongation factor P (efp) from Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)

KEGG orthology group: K02356, elongation factor P (inferred from 87% identity to bsb:Bresu_1422)

MetaCyc: 34% identical to protein chain elongation factor EF-P (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"Translation elongation factor P" in subsystem Translation elongation factors eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HXQ8 at UniProt or InterPro

Protein Sequence (188 amino acids)

>A4249_RS08830 elongation factor P (Brevundimonas sp. GW460-12-10-14-LB2)
MKINGNTIKPGMVLQHNGGLWVVTKASHVKPGKGGAFANVEAKNLETGNKLNERFRSEDK
VERVTLEQKDFSYLFDNGDSLVFMDDTTYEQIELQKDWVGEERIPYLQEGMKVVIEMHEE
RPIGLELPDQVVLEVAETEPTVKGQTASSSYKPALASNGVRIMIPPYMSAGERIVVDTTS
GEYVRRAD