Protein Info for A4249_RS08770 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: D-amino acid dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF01266: DAO" amino acids 2 to 398 (397 residues), 278.1 bits, see alignment E=5.3e-86 PF00070: Pyr_redox" amino acids 2 to 35 (34 residues), 24.3 bits, see alignment 1.3e-08 PF02558: ApbA" amino acids 3 to 33 (31 residues), 23.7 bits, see alignment (E = 1.1e-08) PF13450: NAD_binding_8" amino acids 5 to 40 (36 residues), 27.5 bits, see alignment 1.1e-09

Best Hits

Swiss-Prot: 68% identical to DADA_SPHWW: D-amino acid dehydrogenase (dadA) from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)

KEGG orthology group: K00285, D-amino-acid dehydrogenase [EC: 1.4.99.1] (inferred from 68% identity to swi:Swit_0808)

MetaCyc: 55% identical to D-amino acid dehydrogenase (Escherichia coli K-12 substr. MG1655)
RXN-11193 [EC: 1.4.5.1]; 1.4.5.- [EC: 1.4.5.1]

Predicted SEED Role

"D-amino acid dehydrogenase small subunit (EC 1.4.99.1)" in subsystem Pyruvate Alanine Serine Interconversions or Respiratory dehydrogenases 1 (EC 1.4.99.1)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 1.4.5.1 or 1.4.99.1

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HXQ1 at UniProt or InterPro

Protein Sequence (428 amino acids)

>A4249_RS08770 D-amino acid dehydrogenase (Brevundimonas sp. GW460-12-10-14-LB2)
MRVLVLGSGVIGVTTAWYLSQAGHEVTVVDRQAGPALETSFANAAQISPGYSAPWAAPSI
PVKAMKWLLMRHAPLIVRPRLDMAMVRWTVAMLRNCTHDRYALNKSRMVRLAEYSRDQID
LLRRETGITYDGRQQGTLQLFRTEKQLADVHKDVDVLKAAGVPCEVLDRSGCIAAEPGLA
ASDVDFVGGLRLPHDETGDCFLFTNALAKLAAERGVVFHTGTEIQSIAMTDGRATGAMTS
KGAMTADLVILALGSYSPMMAKPLGLDLPVYPVKGYSITAKIVNEDRAPVSTVMDESYKV
AITRLGDRIRVGGMAELSGYNNTLPAVRRETLAHSVGSLFPGGGDLAGASYWSGLRPMTP
DGTPVIGATKVPGLYLNTGHGTLGWTMACGSARVLADMVDGKAPEIETRDLSLNRYGAWA
GAFAPGYS