Protein Info for A4249_RS08270 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: DedA family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 transmembrane" amino acids 20 to 53 (34 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 114 to 129 (16 residues), see Phobius details amino acids 145 to 166 (22 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details PF09335: SNARE_assoc" amino acids 39 to 163 (125 residues), 73.5 bits, see alignment E=1.1e-24

Best Hits

KEGG orthology group: None (inferred from 43% identity to sno:Snov_0434)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HZI2 at UniProt or InterPro

Protein Sequence (220 amino acids)

>A4249_RS08270 DedA family protein (Brevundimonas sp. GW460-12-10-14-LB2)
MDSLLQAVGDFIARNHMWAGVMLGLVVFVESLAVVGAFVPATGLLVAAGGLIAAGVLDPV
NVIVGCVIGAVIGDAISYWAGRRLGVRFLQRPMFKAHRRRIAWTRLYCRRYGVMSIFVGR
FFGPLRAFVPLTLGMLRMRQRAFQFGNVTSGIVWVLAMLAPGYLAAQGLAKMEVLSEAHG
PTLLIGALAVTILIVAVAYRLVKARMSRKSAIMRGALQGR