Protein Info for A4249_RS07675 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: pectate lyase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 547 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF09492: Pec_lyase" amino acids 163 to 314 (152 residues), 81.4 bits, see alignment E=3.5e-27

Best Hits

KEGG orthology group: None (inferred from 74% identity to bsb:Bresu_3169)

Predicted SEED Role

"FIG00483917: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A168NIV0 at UniProt or InterPro

Protein Sequence (547 amino acids)

>A4249_RS07675 pectate lyase (Brevundimonas sp. GW460-12-10-14-LB2)
MSVTSMNRRALLAAGAAATFVAASGPAMAQASPGRAAILDTMKRAARFMSEEAAVEGGYV
WQYLPDFSRRWGELEANPTMIWVQPPGTATVGHLFLDAYHATGDEFYYEAAKKAADALIK
GQHPLGGWNYVIDTAGEESLKQWYGTVAANAWRLEEFHHYYGNATFDDAGTAEASQLLLR
IYLEKKDRKYLVPLNKAISFVLESQYENGGWPQRYPFVENGGLHGHADYTPYITFNDDVA
GENLEFLIYAYHGLARNGRGDARILDAINRGMDIFVKTQQPQPQPAWGLQHFPDTLKPAG
ARTIEPQAFVTHTTGTNIKSMMGFYRLTGDRKYLARLPEAMDWLDQVAAKPPLNTPGRTH
PTFILEGANTPIYIHRRGSNIANGQYYADDNPTNLIVHYGSFRNVDTPALRAEYARLSTM
PVDEATRGSPLKARPGSLNLPKYFTLQDVDVWDMSSDARRPTAPHAGRAAEVMAGLNARG
YWPTPLTTTSNPYKGPSPTAVTGGEYQMTRVGDLWDTSPYNTDFPVEGVSTSVFIRNMGD
LIESLGA