Protein Info for A4249_RS06690 in Brevundimonas sp. GW460-12-10-14-LB2

Annotation: DUF423 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 120 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 41 to 59 (19 residues), see Phobius details amino acids 66 to 89 (24 residues), see Phobius details amino acids 95 to 116 (22 residues), see Phobius details PF04241: DUF423" amino acids 21 to 101 (81 residues), 51.3 bits, see alignment E=5.5e-18

Best Hits

KEGG orthology group: None (inferred from 67% identity to bsb:Bresu_2292)

Predicted SEED Role

"COG2363"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A160HZG1 at UniProt or InterPro

Protein Sequence (120 amino acids)

>A4249_RS06690 DUF423 domain-containing protein (Brevundimonas sp. GW460-12-10-14-LB2)
MTVSRNLIAFAALNGALAVALGAFAAHGAGPQIKTLLTTGAQYQIVHAVFAFACAQWTGG
GGLARLAGWLGSIGGLIFCLALAAIAFLGVPAFGAVAPIGGLLMTAGWLCLAFAALRSRP